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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1812230 |
| Transcript ID | Lj1g3v1812230.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Glycine max] gi|356518209|ref|XP_003527773.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 3 | 13 | 11 | – | – | |
| Phobius | 14 | 25 | 12 | – | – | |
| Phobius | 26 | 1118 | 1093 | – | – | |
| ProSiteProfiles | 126 | 156 | 31 | 6.347 | ||
| ProSiteProfiles | 161 | 195 | 35 | 6.928 | ||
| Pfam | 188 | 244 | 57 | 8.90E-07 | ||
| ProSiteProfiles | 196 | 230 | 35 | 10.457 | ||
| PANTHER | 216 | 436 | 221 | 6.50E-300 | – | |
| PANTHER | 216 | 436 | 221 | 6.50E-300 | – | |
| ProSiteProfiles | 231 | 265 | 35 | 9.558 | ||
| TIGRFAM | 234 | 267 | 34 | 0.001 | ||
| Pfam | 262 | 293 | 32 | 8.10E-07 | ||
| ProSiteProfiles | 266 | 300 | 35 | 11.213 | ||
| TIGRFAM | 268 | 302 | 35 | 2.40E-08 | ||
| Pfam | 300 | 347 | 48 | 7.50E-13 | ||
| ProSiteProfiles | 301 | 335 | 35 | 12.627 | ||
| TIGRFAM | 303 | 336 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 336 | 370 | 35 | 10.753 | ||
| TIGRFAM | 338 | 372 | 35 | 7.00E-04 | ||
| Pfam | 370 | 419 | 50 | 1.90E-15 | ||
| ProSiteProfiles | 371 | 405 | 35 | 12.891 | ||
| TIGRFAM | 373 | 406 | 34 | 1.20E-08 | ||
| Gene3D | 381 | 471 | 91 | 1.10E-10 | ||
| ProSiteProfiles | 406 | 440 | 35 | 13.482 | ||
| TIGRFAM | 408 | 441 | 34 | 3.60E-09 | ||
| SUPERFAMILY | 417 | 648 | 232 | 2.33E-09 | – | |
| Pfam | 429 | 482 | 54 | 4.40E-05 | ||
| ProSiteProfiles | 441 | 475 | 35 | 11.027 | ||
| TIGRFAM | 443 | 476 | 34 | 7.30E-07 | ||
| ProSiteProfiles | 476 | 510 | 35 | 9.197 | ||
| TIGRFAM | 479 | 512 | 34 | 7.70E-04 | ||
| PANTHER | 507 | 680 | 174 | 6.50E-300 | – | |
| PANTHER | 507 | 680 | 174 | 6.50E-300 | – | |
| Gene3D | 508 | 642 | 135 | 1.10E-10 | ||
| Pfam | 510 | 547 | 38 | 5.20E-10 | ||
| ProSiteProfiles | 511 | 545 | 35 | 13.954 | ||
| TIGRFAM | 513 | 547 | 35 | 8.50E-12 | ||
| ProSiteProfiles | 546 | 580 | 35 | 10.052 | ||
| Pfam | 550 | 575 | 26 | 0.099 | ||
| TIGRFAM | 550 | 581 | 32 | 0.0012 | ||
| Pfam | 580 | 629 | 50 | 7.80E-16 | ||
| ProSiteProfiles | 581 | 615 | 35 | 12.364 | ||
| TIGRFAM | 583 | 617 | 35 | 3.40E-09 | ||
| ProSiteProfiles | 616 | 650 | 35 | 11.805 | ||
| TIGRFAM | 618 | 652 | 35 | 5.90E-08 | ||
| Pfam | 650 | 695 | 46 | 3.10E-09 | ||
| ProSiteProfiles | 651 | 681 | 31 | 10.435 | ||
| TIGRFAM | 654 | 680 | 27 | 2.10E-04 | ||
| ProSiteProfiles | 685 | 720 | 36 | 6.675 | ||
| ProSiteProfiles | 756 | 791 | 36 | 6.665 | ||
| SUPERFAMILY | 776 | 992 | 217 | 2.88E-08 | – | |
| ProSiteProfiles | 792 | 826 | 35 | 11.115 | ||
| Pfam | 795 | 824 | 30 | 1.00E-04 | ||
| TIGRFAM | 795 | 828 | 34 | 4.70E-08 | ||
| Pfam | 826 | 875 | 50 | 1.10E-13 | ||
| ProSiteProfiles | 827 | 861 | 35 | 12.189 | ||
| TIGRFAM | 829 | 863 | 35 | 9.30E-09 | ||
| PANTHER | 857 | 1113 | 257 | 6.50E-300 | – | |
| PANTHER | 857 | 1113 | 257 | 6.50E-300 | – | |
| ProSiteProfiles | 862 | 896 | 35 | 9.46 | ||
| TIGRFAM | 864 | 897 | 34 | 3.50E-05 | ||
| ProSiteProfiles | 897 | 931 | 35 | 11.049 | ||
| TIGRFAM | 899 | 932 | 34 | 5.80E-07 | ||
| Pfam | 900 | 928 | 29 | 1.20E-04 | ||
| Gene3D | 908 | 1097 | 190 | 5.20E-09 | ||
| Pfam | 931 | 979 | 49 | 1.50E-14 | ||
| ProSiteProfiles | 932 | 966 | 35 | 13.154 | ||
| TIGRFAM | 935 | 967 | 33 | 9.20E-10 | ||
| ProSiteProfiles | 967 | 1001 | 35 | 11.586 | ||
| TIGRFAM | 970 | 1003 | 34 | 1.30E-06 | ||
| Pfam | 1001 | 1045 | 45 | 4.10E-17 | ||
| ProSiteProfiles | 1002 | 1036 | 35 | 14.546 | ||
| TIGRFAM | 1004 | 1037 | 34 | 2.70E-11 | ||
| ProSiteProfiles | 1037 | 1071 | 35 | 10.271 | ||
| TIGRFAM | 1039 | 1073 | 35 | 8.60E-04 | ||
| Pfam | 1071 | 1111 | 41 | 7.10E-10 | ||
| ProSiteProfiles | 1072 | 1106 | 35 | 11.948 | ||
| TIGRFAM | 1074 | 1108 | 35 | 3.40E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1812230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1812230.1, powered by CORGI.
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