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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2143360 |
| Transcript ID | Lj1g3v2143360.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357466899|ref|XP_003603734.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | – | – | |
| MobiDBLite | 429 | 459 | 31 | – | – | |
| MobiDBLite | 512 | 539 | 28 | – | – | |
| ProSiteProfiles | 588 | 688 | 101 | 14.778 | ||
| SUPERFAMILY | 589 | 684 | 96 | 2.60E-12 | ||
| Gene3D | 591 | 686 | 96 | 1.40E-10 | ||
| Pfam | 601 | 678 | 78 | 1.10E-11 | ||
| PANTHER | 622 | 693 | 72 | 1.10E-277 | – | |
| PANTHER | 622 | 693 | 72 | 1.10E-277 | – | |
| PANTHER | 826 | 1335 | 510 | 1.10E-277 | – | |
| PANTHER | 826 | 1335 | 510 | 1.10E-277 | – | |
| Gene3D | 827 | 889 | 63 | 4.20E-13 | ||
| SUPERFAMILY | 827 | 1165 | 339 | 5.18E-74 | ||
| PRINTS | 829 | 851 | 23 | 1.40E-05 | – | |
| Pfam | 838 | 1309 | 472 | 3.70E-107 | ||
| PRINTS | 852 | 865 | 14 | 1.40E-05 | – | |
| MobiDBLite | 981 | 1002 | 22 | – | – | |
| Gene3D | 1053 | 1263 | 211 | 3.40E-67 | – | |
| SUPERFAMILY | 1147 | 1258 | 112 | 7.85E-29 | – | |
| SUPERFAMILY | 1268 | 1310 | 43 | 5.18E-74 | ||
| SUPERFAMILY | 1406 | 1490 | 85 | 1.31E-05 | ||
| Gene3D | 1407 | 1489 | 83 | 0.001 | ||
| MobiDBLite | 1505 | 1558 | 54 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj1g3v2143360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2143360.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.