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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2822820 |
| Transcript ID | Lj1g3v2822820.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] gi|356513749|ref|XP_003525573.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 4 | 14 | 11 | – | – | |
| Phobius | 15 | 26 | 12 | – | – | |
| Phobius | 27 | 733 | 707 | – | – | |
| PANTHER | 47 | 77 | 31 | 3.60E-233 | – | |
| PANTHER | 47 | 77 | 31 | 3.60E-233 | – | |
| Pfam | 98 | 146 | 49 | 1.20E-10 | ||
| ProSiteProfiles | 99 | 133 | 35 | 9.865 | ||
| TIGRFAM | 102 | 134 | 33 | 0.0011 | ||
| PANTHER | 104 | 269 | 166 | 3.60E-233 | – | |
| PANTHER | 104 | 269 | 166 | 3.60E-233 | – | |
| ProSiteProfiles | 134 | 164 | 31 | 5.152 | ||
| ProSiteProfiles | 166 | 200 | 35 | 6.577 | ||
| ProSiteProfiles | 201 | 235 | 35 | 11.345 | ||
| TIGRFAM | 203 | 237 | 35 | 8.00E-08 | ||
| Pfam | 204 | 233 | 30 | 6.20E-05 | ||
| Pfam | 235 | 282 | 48 | 2.00E-08 | ||
| ProSiteProfiles | 236 | 270 | 35 | 11.137 | ||
| SUPERFAMILY | 237 | 267 | 31 | 7.59E-05 | ||
| TIGRFAM | 239 | 271 | 33 | 9.70E-07 | ||
| ProSiteProfiles | 271 | 305 | 35 | 6.489 | ||
| Pfam | 302 | 333 | 32 | 3.60E-06 | ||
| PANTHER | 305 | 440 | 136 | 3.60E-233 | – | |
| PANTHER | 305 | 440 | 136 | 3.60E-233 | – | |
| ProSiteProfiles | 306 | 340 | 35 | 10.567 | ||
| TIGRFAM | 308 | 341 | 34 | 6.60E-06 | ||
| SUPERFAMILY | 339 | 377 | 39 | 7.59E-05 | ||
| ProSiteProfiles | 341 | 375 | 35 | 12.595 | ||
| Pfam | 342 | 389 | 48 | 1.50E-14 | ||
| TIGRFAM | 345 | 377 | 33 | 3.40E-10 | ||
| ProSiteProfiles | 376 | 410 | 35 | 10.95 | ||
| TIGRFAM | 378 | 411 | 34 | 0.001 | ||
| Pfam | 406 | 436 | 31 | 2.20E-05 | ||
| ProSiteProfiles | 411 | 445 | 35 | 8.703 | ||
| SUPERFAMILY | 412 | 451 | 40 | 7.59E-05 | ||
| ProSiteProfiles | 466 | 500 | 35 | 5.229 | ||
| Pfam | 476 | 497 | 22 | 0.13 | ||
| ProSiteProfiles | 501 | 535 | 35 | 8.243 | ||
| Gene3D | 505 | 702 | 198 | 1.60E-05 | ||
| SUPERFAMILY | 508 | 602 | 95 | 7.59E-05 | ||
| PANTHER | 531 | 718 | 188 | 3.60E-233 | – | |
| PANTHER | 531 | 718 | 188 | 3.60E-233 | – | |
| ProSiteProfiles | 536 | 570 | 35 | 10.095 | ||
| Pfam | 538 | 568 | 31 | 0.0028 | ||
| TIGRFAM | 538 | 572 | 35 | 2.70E-06 | ||
| Pfam | 570 | 616 | 47 | 7.20E-20 | ||
| ProSiteProfiles | 571 | 605 | 35 | 14.984 | ||
| TIGRFAM | 573 | 607 | 35 | 6.50E-13 | ||
| ProSiteProfiles | 606 | 641 | 36 | 6.665 | ||
| Pfam | 642 | 685 | 44 | 4.00E-14 | ||
| ProSiteProfiles | 642 | 676 | 35 | 12.803 | ||
| TIGRFAM | 644 | 677 | 34 | 3.90E-09 | ||
| SUPERFAMILY | 646 | 703 | 58 | 7.59E-05 | ||
| ProSiteProfiles | 677 | 711 | 35 | 12.299 | ||
| TIGRFAM | 679 | 712 | 34 | 6.50E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2822820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2822820.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.