Domain Predictions — View

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PF00588

Source: Pfam

Description

SpoU rRNA Methylase family

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of GO:0003676
GO:0006396 View details of GO:0006396 AmiGO InterPro QuickGO	Biological process	RNA processing	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	Subterm of GO:0016070 Part of GO:0010467
GO:0008173 View details of GO:0008173 AmiGO InterPro QuickGO	Molecular function	RNA methyltransferase activity	Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.	Subterm of GO:0008168 GO:0140098

Associated Lotus transcripts 17

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0181439.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	AGAMOUS-like 26 isoform 1 [Theobroma cacao] gi\|508704835\|gb\|EOX96731.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR016914 IPR029026 IPR029028 MF_01885 PF00588 PTHR12029 PTHR12029:SF31 SSF75217	10
Lj0g3v0266349.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA methyltransferase-like protein [Medicago truncatula] gi\|357517191\|ref\|XP_003628884.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 PTHR12029 SSF75217	7
Lj0g3v0266349.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA methyltransferase-like protein [Medicago truncatula] gi\|357517191\|ref\|XP_003628884.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 PTHR12029 SSF75217	7
Lj0g3v0266349.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA methyltransferase-like protein [Medicago truncatula] gi\|357517191\|ref\|XP_003628884.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 NON_CYTOPLASMIC_DOMAIN PF00588 PTHR12029 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF75217 SignalP-noTM_EUK	13
Lj0g3v0266349.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA methyltransferase-like protein [Medicago truncatula] gi\|357517191\|ref\|XP_003628884.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 SSF75217	6
Lj1g3v2994560.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi\|357502123\|ref\|XP_003621350.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 NON_CYTOPLASMIC_DOMAIN PF00588 PTHR12029 PTHR12029:SF45 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF75217 SignalP-TM_GRAM_POSITIVE mobidb-lite	15
Lj1g3v2994560.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi\|357502123\|ref\|XP_003621350.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 IPR033671 MF_02060 NON_CYTOPLASMIC_DOMAIN PF00588 PTHR12029 PTHR12029:SF45 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF75217 SignalP-TM_GRAM_POSITIVE mobidb-lite	17
Lj4g3v1212310.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA/rRNA methyltransferase family protein isoform 1 [Theobroma cacao] gi\|508776921\|gb\|EOY24177.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 PTHR12029 PTHR12029:SF11 SSF75217	8
Lj4g3v2375050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB-like [Cicer arietinum] gi\|502151214\|ref\|XP_004508331.1\|	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 PTHR12029 PTHR12029:SF48 SSF75217	8
Lj4g3v3043940.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA/rRNA methyltransferase family protein [Theobroma cacao] gi\|508783395\|gb\|EOY30651.1\|	Domains G3DSA:3.30.1330.30 G3DSA:3.40.1280.10 IPR001537 IPR004441 IPR013123 IPR029026 IPR029028 IPR029064 PF00588 PF08032 PTHR12029 PTHR12029:SF58 SM00967 SSF55315 SSF75217 TIGR00186	16
LotjaGi1g1v0508500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp\|O67577\|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr\|G7L451\|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 PTHR43453 PTHR43453:SF1 SSF75217 cd18092	9
LotjaGi1g1v0508500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp\|O67577\|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr\|G7L451\|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 IPR033671 MF_02060 NON_CYTOPLASMIC_DOMAIN PF00588 PTHR43453 PTHR43453:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF75217 SignalP-TM cd18092 mobidb-lite	18
LotjaGi4g1v0173100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA methyltransferase; TAIR: AT4G38020.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp\|P94538\|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA; TrEMBL-Plants: tr\|G7LIJ4\|G7LIJ4_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi4g1v0173100	Domains G3DSA:3.30.1330.30 G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 IPR029064 PF00588 PTHR43191 PTHR43191:SF2 SSF55315 SSF75217 cd18095 mobidb-lite	13
LotjaGi4g1v0195000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA/rRNA methyltransferase family protein; TAIR: AT4G17610.2 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp\|Q13395\|TARB1_HUMAN Probable methyltransferase TARBP1; TrEMBL-Plants: tr\|A0A0R0FD66\|A0A0R0FD66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0195000	Domains Coil G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 NON_CYTOPLASMIC_DOMAIN PF00588 PTHR12029 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF75217 cd18091	14
LotjaGi4g1v0348400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA guanosine-2'-O-methyltransferase; TAIR: AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp\|Q6FF50\|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; TrEMBL-Plants: tr\|K7MJI7\|K7MJI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348400	Domains G3DSA:3.40.1280.10 IPR001537 IPR029026 IPR029028 PF00588 PTHR43191 PTHR43191:SF7 SSF75217 cd18096	9
LotjaGi4g1v0445300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA methyltransferase; TAIR: AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp\|O94631\|MRM1_SCHPO rRNA methyltransferase 1, mitochondrial; TrEMBL-Plants: tr\|I1KPW8\|I1KPW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0445300	Domains G3DSA:3.30.1330.30 G3DSA:3.40.1280.10 IPR001537 IPR004441 IPR013123 IPR029026 IPR029028 IPR029064 PF00588 PF08032 PTHR46103 PTHR46103:SF1 SM00967 SSF55315 SSF75217 TIGR00186 cd18105 mobidb-lite	18
LotjaGi5g1v0261900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA (cytidine(34)-2'-O)-methyltransferase; TAIR: AT5G26880.1 tRNA (cytidine(34)-2'-O)-methyltransferase; Swiss-Prot: sp\|P74516\|TRML_SYNY3 Putative tRNA (cytidine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr\|I3S4V5\|I3S4V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0261900	Domains G3DSA:3.40.1280.10 IPR001537 IPR016914 IPR029026 IPR029028 MF_01885 PF00588 PTHR42971 PTHR42971:SF2 SSF75217 cd18094	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18094	CDD	1	5.88