Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v2994560.2

Overview

Field Value
Gene ID Lj1g3v2994560
Transcript ID Lj1g3v2994560.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description tRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|357502123|ref|XP_003621350.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 30 30 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 6 6 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 26 26 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
7 18 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
19 30 12 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
31 342 312 – –
MobiDBLite
mobidb-lite
50 71 22 – –
PANTHER
PTHR12029:SF45
74 317 244 2.10E-150 –
PANTHER
PTHR12029
74 317 244 2.10E-150 –
Hamap
MF_02060
131 325 195 27.486
IPR033671
SUPERFAMILY
SSF75217
134 312 179 4.38E-42
IPR029028
Gene3D
G3DSA:3.40.1280.10
144 296 153 1.80E-42
IPR029026
Pfam
PF00588
149 290 142 4.60E-33
IPR001537

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of
GO:0030488
Biological process TRNA methylation The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v2994560.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2994560.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.