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Lj1g3v3354070.2

Overview

Field Value
Gene ID Lj1g3v3354070
Transcript ID Lj1g3v3354070.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356555553|ref|XP_003546095.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21319:SF5
5 267 263 3.50E-205
IPR031109
PANTHER
PTHR21319
5 267 263 3.50E-205 –
ProSiteProfiles
PS51266
11 86 76 25.958
IPR008913
SUPERFAMILY
SSF161219
15 87 73 4.45E-18 –
Pfam
PF05495
18 98 81 1.60E-21
IPR008913
ProSiteProfiles
PS51270
88 152 65 34.312
IPR017921
SUPERFAMILY
SSF161245
89 146 58 2.62E-20 –
Gene3D
G3DSA:3.30.40.10
151 213 63 1.20E-14
IPR013083
SUPERFAMILY
SSF57850
152 204 53 1.47E-10 –
Pfam
PF13639
152 195 44 8.40E-07
IPR001841
ProSiteProfiles
PS50089
153 196 44 11.634
IPR001841
SMART
SM00184
153 195 43 7.30E-06
IPR001841
CDD
cd00162
153 199 47 3.28E-04 –
Pfam
PF14599
201 258 58 4.50E-26 –
Gene3D
G3DSA:2.20.28.10
225 262 38 1.80E-19
IPR004039

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v3354070.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3354070.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.