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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4241080 |
| Transcript ID | Lj1g3v4241080.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter A family member 1-like [Glycine max] gi|356504779|ref|XP_003521172.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | – | – | |
| PANTHER | 4 | 229 | 226 | 0 | – | |
| PANTHER | 4 | 229 | 226 | 0 | ||
| Phobius | 26 | 45 | 20 | – | – | |
| Phobius | 46 | 289 | 244 | – | – | |
| PANTHER | 248 | 906 | 659 | 0 | – | |
| PANTHER | 248 | 906 | 659 | 0 | ||
| Pfam | 248 | 482 | 235 | 2.60E-25 | – | |
| TMHMM | 287 | 309 | 23 | – | – | |
| Phobius | 290 | 309 | 20 | – | – | |
| Phobius | 310 | 328 | 19 | – | – | |
| TMHMM | 328 | 350 | 23 | – | – | |
| Phobius | 329 | 353 | 25 | – | – | |
| Phobius | 354 | 364 | 11 | – | – | |
| TMHMM | 365 | 387 | 23 | – | – | |
| Phobius | 365 | 387 | 23 | – | – | |
| Phobius | 388 | 392 | 5 | – | – | |
| Phobius | 393 | 411 | 19 | – | – | |
| TMHMM | 394 | 411 | 18 | – | – | |
| Phobius | 412 | 417 | 6 | – | – | |
| Phobius | 418 | 440 | 23 | – | – | |
| TMHMM | 418 | 440 | 23 | – | – | |
| Phobius | 441 | 459 | 19 | – | – | |
| Phobius | 460 | 484 | 25 | – | – | |
| TMHMM | 461 | 483 | 23 | – | – | |
| Phobius | 485 | 932 | 448 | – | – | |
| Gene3D | 558 | 800 | 243 | 1.10E-66 | ||
| CDD | 562 | 783 | 222 | 2.44E-103 | – | |
| SUPERFAMILY | 562 | 779 | 218 | 1.10E-54 | ||
| ProSiteProfiles | 562 | 795 | 234 | 19.295 | ||
| Pfam | 582 | 725 | 144 | 3.00E-29 | ||
| SMART | 590 | 772 | 183 | 1.00E-07 | ||
| ProSitePatterns | 697 | 711 | 15 | – | ||
| Phobius | 933 | 949 | 17 | – | – | |
| TMHMM | 947 | 969 | 23 | – | – | |
| Phobius | 950 | 954 | 5 | – | – | |
| PANTHER | 953 | 1241 | 289 | 0 | – | |
| PANTHER | 953 | 1241 | 289 | 0 | ||
| Phobius | 955 | 974 | 20 | – | – | |
| Phobius | 975 | 994 | 20 | – | – | |
| Pfam | 994 | 1241 | 248 | 2.00E-16 | – | |
| TMHMM | 995 | 1014 | 20 | – | – | |
| Phobius | 995 | 1014 | 20 | – | – | |
| Phobius | 1015 | 1189 | 175 | – | – | |
| Phobius | 1190 | 1213 | 24 | – | – | |
| TMHMM | 1191 | 1213 | 23 | – | – | |
| Phobius | 1214 | 1241 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v4241080.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4241080.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.