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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4691520 |
| Transcript ID | Lj1g3v4691520.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357510879|ref|XP_003625728.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 117 | 263 | 147 | 4.10E-303 | – | |
| PANTHER | 117 | 263 | 147 | 4.10E-303 | – | |
| Pfam | 133 | 203 | 71 | 4.90E-05 | ||
| MobiDBLite | 278 | 336 | 59 | – | – | |
| PANTHER | 288 | 525 | 238 | 4.10E-303 | – | |
| PANTHER | 288 | 525 | 238 | 4.10E-303 | – | |
| Pfam | 378 | 449 | 72 | 8.40E-23 | ||
| Gene3D | 462 | 522 | 61 | 2.00E-17 | ||
| SUPERFAMILY | 464 | 523 | 60 | 1.07E-15 | ||
| ProSiteProfiles | 475 | 520 | 46 | 10.033 | ||
| CDD | 477 | 517 | 41 | 1.65E-15 | – | |
| SMART | 477 | 518 | 42 | 7.60E-09 | ||
| Pfam | 478 | 519 | 42 | 3.70E-07 | ||
| ProSitePatterns | 478 | 517 | 40 | – | ||
| SUPERFAMILY | 559 | 619 | 61 | 3.54E-05 | ||
| Gene3D | 560 | 623 | 64 | 1.00E-06 | ||
| PANTHER | 565 | 842 | 278 | 4.10E-303 | – | |
| SMART | 565 | 622 | 58 | 1.3 | ||
| PANTHER | 565 | 842 | 278 | 4.10E-303 | – | |
| SUPERFAMILY | 716 | 808 | 93 | 2.77E-05 | ||
| Gene3D | 722 | 806 | 85 | 6.30E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj1g3v4691520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4691520.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.