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Lj1g3v4808860.1

Overview

Field Value
Gene ID Lj1g3v4808860
Transcript ID Lj1g3v4808860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translation initiation factor IF-2-like isoform X1 [Cicer arietinum] gi|502154667|ref|XP_004509778.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 26 26 – –
Phobius
SIGNAL_PEPTIDE
1 43 43 – –
Hamap
MF_00100_B
8 705 698 13.527
IPR000178
Phobius
SIGNAL_PEPTIDE_H_REGION
27 38 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
39 43 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
44 719 676 – –
TIGRFAM
TIGR00487
128 704 577 1.90E-173
IPR000178
PANTHER
PTHR23115:SF184
181 524 344 1.40E-193 –
PANTHER
PTHR23115
181 524 344 1.40E-193 –
ProSiteProfiles
PS51722
198 368 171 48.23
IPR000795
Gene3D
G3DSA:3.40.50.300
199 359 161 6.70E-45
IPR027417
SUPERFAMILY
SSF52540
199 389 191 1.10E-46
IPR027417
TIGRFAM
TIGR00231
201 354 154 8.70E-29
IPR005225
CDD
cd01887
202 365 164 7.36E-96 –
Pfam
PF00009
203 360 158 1.10E-31 –
Gene3D
G3DSA:2.40.30.10
371 462 92 1.00E-15 –
SUPERFAMILY
SSF50447
372 454 83 1.08E-17
IPR009000
CDD
cd03702
375 469 95 7.09E-38 –
Pfam
PF11987
498 590 93 1.20E-26
IPR023115
SUPERFAMILY
SSF52156
499 607 109 1.44E-23
IPR023115
Gene3D
G3DSA:3.40.50.10050
501 579 79 2.00E-17
IPR023115
PANTHER
PTHR23115:SF184
548 718 171 1.40E-193 –
PANTHER
PTHR23115
548 718 171 1.40E-193 –
SUPERFAMILY
SSF50447
603 704 102 1.26E-22
IPR009000
Gene3D
G3DSA:2.40.30.10
603 705 103 4.60E-31 –
CDD
cd03692
608 697 90 7.00E-33 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v4808860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4808860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.