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Lj1g3v4917520.1

Overview

Field Value
Gene ID Lj1g3v4917520
Transcript ID Lj1g3v4917520.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356505514|ref|XP_003521535.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21319:SF12
9 271 263 1.70E-181 –
PANTHER
PTHR21319
9 271 263 1.70E-181 –
ProSiteProfiles
PS51266
19 94 76 24.225
IPR008913
SUPERFAMILY
SSF161219
21 95 75 4.84E-16 –
Pfam
PF05495
26 106 81 3.40E-19
IPR008913
ProSiteProfiles
PS51270
96 160 65 31.713
IPR017921
SUPERFAMILY
SSF161245
97 154 58 2.48E-19 –
Gene3D
G3DSA:3.30.40.10
158 211 54 5.30E-13
IPR013083
SUPERFAMILY
SSF57850
160 210 51 9.79E-11 –
Pfam
PF13639
160 203 44 3.80E-09
IPR001841
SMART
SM00184
161 203 43 9.90E-07
IPR001841
ProSiteProfiles
PS50089
161 203 43 11.899
IPR001841
CDD
cd00162
161 207 47 2.48E-04 –
Pfam
PF14599
209 265 57 2.10E-22 –
Gene3D
G3DSA:2.20.28.10
232 270 39 2.70E-18
IPR004039

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj1g3v4917520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4917520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.