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Lj2g3v0690370.2

Overview

Field Value
Gene ID Lj2g3v0690370
Transcript ID Lj2g3v0690370.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 61 61 – –
Coils
Coil
42 62 21 – –
PANTHER
PTHR23115:SF133
65 510 446 2.10E-266 –
PANTHER
PTHR23115
65 510 446 2.10E-266 –
Gene3D
G3DSA:3.40.50.300
74 316 243 5.50E-68
IPR027417
SUPERFAMILY
SSF52540
80 319 240 2.03E-59
IPR027417
ProSiteProfiles
PS51722
84 310 227 54.026
IPR000795
Pfam
PF00009
84 286 203 3.40E-43 –
CDD
cd01883
88 309 222 2.14E-135 –
PRINTS
PR00315
88 101 14 9.70E-14
IPR000795
ProSitePatterns
PS00301
140 155 16 –
IPR031157
PRINTS
PR00315
167 177 11 9.70E-14
IPR000795
PRINTS
PR00315
183 194 12 9.70E-14
IPR000795
PRINTS
PR00315
227 236 10 9.70E-14
IPR000795
SUPERFAMILY
SSF50447
308 400 93 2.16E-22
IPR009000
CDD
cd04089
315 396 82 9.70E-40 –
Gene3D
G3DSA:2.40.30.10
317 418 102 5.80E-30 –
Pfam
PF03144
328 394 67 5.90E-10
IPR004161
Pfam
PF03143
401 509 109 1.10E-34
IPR004160
CDD
cd03704
402 510 109 1.41E-47 –
SUPERFAMILY
SSF50465
404 509 106 3.29E-27
IPR009001
Gene3D
G3DSA:2.40.30.10
419 509 91 2.10E-33 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj2g3v0690370.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0690370.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.