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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1069200 |
| Transcript ID | Lj2g3v1069200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 179 | 179 | 0 | – | |
| PANTHER | 1 | 179 | 179 | 0 | – | |
| Pfam | 12 | 676 | 665 | 1.00E-205 | ||
| MobiDBLite | 171 | 212 | 42 | – | – | |
| PANTHER | 216 | 784 | 569 | 0 | – | |
| PANTHER | 216 | 784 | 569 | 0 | – | |
| Coils | 271 | 298 | 28 | – | – | |
| SUPERFAMILY | 685 | 765 | 81 | 3.44E-23 | – | |
| ProSiteProfiles | 692 | 766 | 75 | 29.263 | ||
| Pfam | 693 | 764 | 72 | 2.70E-29 | ||
| Gene3D | 694 | 754 | 61 | 2.10E-19 | ||
| SMART | 696 | 759 | 64 | 1.10E-21 | ||
| MobiDBLite | 770 | 793 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Ubiquitin ligase complex | A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex. | ||
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Ubiquitin-ubiquitin ligase activity | Isoenergetic transfer of ubiquitin from one protein to an existing ubiquitin chain via the reaction X-ubiquitin + Y-ubiquitin -> Y-ubiquitin-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue. |
Expression pattern of Lj2g3v1069200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1069200.1, powered by CORGI.
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