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PF10408

Source: Pfam

Description

Ubiquitin elongating factor core

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000151
Cellular component Ubiquitin ligase complex A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of
GO:0034450
Molecular function Ubiquitin-ubiquitin ligase activity Isoenergetic transfer of ubiquitin from one protein to an existing ubiquitin chain via the reaction X-ubiquitin + Y-ubiquitin -> Y-ubiquitin-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue.
Subterm of

Associated Lotus transcripts 11

Transcript Name Description Predicted domains Domain count
Lj1g3v1217910.1
– PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max] gi|356516283|ref|XP_003526825.1|
Domains
20
Lj2g3v1069200.1
– PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1|
Domains
13
Lj2g3v1069200.2
– PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1|
Domains
13
Lj2g3v1069200.3
– PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1|
Domains
12
LotjaGi1g1v0311400.2
– E3 ubiquitin-protein ligase RKP; TAIR: AT2G22010.1 related to KPC1; Swiss-Prot: sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP; TrEMBL-Plants: tr|I1KBB2|I1KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0311400
Domains
24
LotjaGi1g1v0311400.3
– E3 ubiquitin-protein ligase RKP; TAIR: AT2G22010.1 related to KPC1; Swiss-Prot: sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP; TrEMBL-Plants: tr|I1KBB2|I1KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0311400
Domains
24
LotjaGi2g1v0263400.1
– Ubiquitin conjugation factor E4, putative; TAIR: AT5G15400.1 U-box domain-containing protein; Swiss-Prot: sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4; TrEMBL-Plants: tr|A0A0S3T8K1|A0A0S3T8K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263400
Domains
14
LotjaGi2g1v0263400.2
– Ubiquitin conjugation factor E4, putative; TAIR: AT5G15400.1 U-box domain-containing protein; Swiss-Prot: sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4; TrEMBL-Plants: tr|A0A0S3T8K1|A0A0S3T8K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263400
Domains
9
LotjaGi2g1v0263400.3
– Ubiquitin conjugation factor E4, putative; TAIR: AT5G15400.1 U-box domain-containing protein; Swiss-Prot: sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4; TrEMBL-Plants: tr|A0A0S3T8K1|A0A0S3T8K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263400
Domains
14
LotjaGi2g1v0263400.4
– Ubiquitin conjugation factor E4, putative; TAIR: AT5G15400.1 U-box domain-containing protein; Swiss-Prot: sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4; TrEMBL-Plants: tr|A0A0S3T8K1|A0A0S3T8K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263400
Domains
6
LotjaGi2g1v0263500_LC.1
– Ubiquitin conjugation factor E4, putative; TAIR: AT5G15400.1 U-box domain-containing protein; Swiss-Prot: sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4; TrEMBL-Plants: tr|A0A0R0EU58|A0A0R0EU58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263500_LC
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
PTHR13931:SF2 PANTHER 1 9.09