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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2017620 |
| Transcript ID | Lj2g3v2017620.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Heavy metal P-type ATPase [Medicago truncatula] gi|357518503|ref|XP_003629540.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 290 | 290 | – | – | |
| SUPERFAMILY | 44 | 117 | 74 | 4.58E-19 | ||
| PRINTS | 48 | 73 | 26 | 7.80E-14 | – | |
| Gene3D | 48 | 123 | 76 | 1.20E-21 | – | |
| ProSiteProfiles | 48 | 114 | 67 | 21.892 | ||
| TIGRFAM | 51 | 112 | 62 | 1.90E-11 | ||
| PANTHER | 53 | 263 | 211 | 0 | – | |
| CDD | 53 | 113 | 61 | 1.23E-15 | ||
| PANTHER | 53 | 263 | 211 | 0 | – | |
| Pfam | 53 | 111 | 59 | 2.70E-14 | ||
| ProSitePatterns | 53 | 82 | 30 | – | ||
| PRINTS | 74 | 97 | 24 | 7.80E-14 | – | |
| PRINTS | 103 | 123 | 21 | 7.80E-14 | – | |
| SUPERFAMILY | 124 | 197 | 74 | 1.31E-18 | ||
| ProSiteProfiles | 126 | 192 | 67 | 21.837 | ||
| Gene3D | 128 | 194 | 67 | 6.60E-21 | – | |
| Pfam | 129 | 189 | 61 | 3.80E-12 | ||
| TIGRFAM | 129 | 188 | 60 | 1.60E-08 | ||
| CDD | 131 | 190 | 60 | 1.64E-14 | ||
| ProSitePatterns | 131 | 160 | 30 | – | ||
| PRINTS | 149 | 170 | 22 | 7.80E-14 | – | |
| SUPERFAMILY | 197 | 265 | 69 | 8.77E-06 | ||
| Gene3D | 200 | 284 | 85 | 3.80E-06 | – | |
| ProSiteProfiles | 201 | 262 | 62 | 9.811 | ||
| PANTHER | 283 | 971 | 689 | 0 | – | |
| PANTHER | 283 | 971 | 689 | 0 | – | |
| Phobius | 291 | 312 | 22 | – | – | |
| TMHMM | 293 | 315 | 23 | – | – | |
| Phobius | 313 | 323 | 11 | – | – | |
| Phobius | 324 | 345 | 22 | – | – | |
| Phobius | 346 | 365 | 20 | – | – | |
| Gene3D | 363 | 538 | 176 | 8.80E-27 | ||
| TIGRFAM | 364 | 965 | 602 | 3.00E-188 | ||
| Phobius | 366 | 388 | 23 | – | – | |
| TMHMM | 366 | 388 | 23 | – | – | |
| Phobius | 389 | 399 | 11 | – | – | |
| Phobius | 400 | 418 | 19 | – | – | |
| SUPERFAMILY | 401 | 435 | 35 | 3.01E-11 | – | |
| TMHMM | 403 | 420 | 18 | – | – | |
| Pfam | 403 | 642 | 240 | 1.90E-63 | ||
| TIGRFAM | 404 | 933 | 530 | 5.60E-81 | ||
| Phobius | 419 | 556 | 138 | – | – | |
| SUPERFAMILY | 451 | 537 | 87 | 6.28E-20 | – | |
| PRINTS | 487 | 501 | 15 | 1.30E-27 | – | |
| SUPERFAMILY | 538 | 678 | 141 | 3.01E-11 | – | |
| TMHMM | 554 | 576 | 23 | – | – | |
| Phobius | 557 | 576 | 20 | – | – | |
| Phobius | 577 | 595 | 19 | – | – | |
| TMHMM | 596 | 615 | 20 | – | – | |
| Phobius | 596 | 616 | 21 | – | – | |
| Phobius | 617 | 915 | 299 | – | – | |
| Gene3D | 622 | 665 | 44 | 6.80E-54 | ||
| Pfam | 647 | 870 | 224 | 1.90E-46 | – | |
| SUPERFAMILY | 650 | 669 | 20 | 1.26E-55 | ||
| PRINTS | 651 | 665 | 15 | 1.30E-27 | – | |
| ProSitePatterns | 653 | 659 | 7 | – | ||
| Gene3D | 666 | 783 | 118 | 1.50E-18 | ||
| SUPERFAMILY | 713 | 962 | 250 | 1.26E-55 | ||
| PRINTS | 781 | 792 | 12 | 1.30E-27 | – | |
| Gene3D | 784 | 925 | 142 | 6.80E-54 | ||
| PRINTS | 803 | 813 | 11 | 1.30E-27 | – | |
| PRINTS | 856 | 875 | 20 | 1.30E-27 | – | |
| PRINTS | 879 | 891 | 13 | 1.30E-27 | – | |
| Phobius | 916 | 938 | 23 | – | – | |
| TMHMM | 916 | 938 | 23 | – | – | |
| Phobius | 939 | 943 | 5 | – | – | |
| TMHMM | 943 | 965 | 23 | – | – | |
| Phobius | 944 | 965 | 22 | – | – | |
| Phobius | 966 | 985 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj2g3v2017620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2017620.1, powered by CORGI.
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