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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2900220 |
| Transcript ID | Lj2g3v2900220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: homeobox protein SBH1-like isoform 1 [Glycine max] gi|356554468|ref|XP_003545568.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 303 | 303 | 1.70E-176 | – | |
| PANTHER | 1 | 303 | 303 | 1.70E-176 | – | |
| SMART | 56 | 100 | 45 | 8.60E-15 | ||
| Pfam | 58 | 99 | 42 | 6.30E-19 | ||
| SMART | 108 | 159 | 52 | 1.10E-24 | ||
| Pfam | 112 | 157 | 46 | 4.90E-21 | ||
| Pfam | 189 | 210 | 22 | 1.90E-09 | ||
| SMART | 189 | 210 | 22 | 7.10E-07 | ||
| ProSiteProfiles | 189 | 209 | 21 | 11.139 | ||
| ProSiteProfiles | 209 | 272 | 64 | 12.228 | ||
| SMART | 211 | 276 | 66 | 2.80E-12 | ||
| SUPERFAMILY | 211 | 283 | 73 | 1.92E-19 | ||
| Gene3D | 214 | 275 | 62 | 2.30E-28 | ||
| CDD | 221 | 273 | 53 | 2.47E-12 | – | |
| Pfam | 229 | 268 | 40 | 2.60E-17 | ||
| ProSitePatterns | 247 | 270 | 24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj2g3v2900220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2900220.1, powered by CORGI.
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