Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v3303470.1

Overview

Field Value
Gene ID Lj2g3v3303470
Transcript ID Lj2g3v3303470.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Cicer arietinum] gi|502099597|ref|XP_004491518.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 58 58 – –
PRINTS
PR02009
68 91 24 2.40E-35
IPR023268
PANTHER
PTHR22807:SF30
70 526 457 6.30E-161 –
PANTHER
PTHR22807
70 526 457 6.30E-161 –
PRINTS
PR02009
92 108 17 2.40E-35
IPR023268
Gene3D
G3DSA:1.10.940.10
94 235 142 1.90E-32
IPR006027
Pfam
PF01029
94 200 107 9.40E-23
IPR006027
SUPERFAMILY
SSF48013
99 234 136 2.49E-26
IPR006027
TIGRFAM
TIGR00563
104 526 423 5.70E-83
IPR004573
PRINTS
PR02009
207 220 14 2.40E-35
IPR023268
SUPERFAMILY
SSF53335
222 526 305 1.99E-63
IPR029063
ProSiteProfiles
PS51686
250 527 278 52.564
IPR001678
PRINTS
PR02008
310 324 15 4.80E-23
IPR023267
Gene3D
G3DSA:3.40.50.150
321 526 206 1.40E-50
IPR029063
Pfam
PF01189
329 524 196 4.70E-50
IPR001678
CDD
cd02440
337 464 128 1.33E-07 –
PRINTS
PR02008
339 349 11 4.80E-23
IPR023267
PRINTS
PR02008
408 420 13 4.80E-23
IPR023267
PRINTS
PR02008
458 474 17 4.80E-23
IPR023267
PRINTS
PR02009
485 497 13 2.40E-35
IPR023268
PRINTS
PR02008
509 526 18 4.80E-23
IPR023267

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008649
Molecular function RRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
Subterm of

Genome browser

LORE1 insertions 35

Expression data

Expression pattern

Expression pattern of Lj2g3v3303470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3303470.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.