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Lj3g3v3189730.1

Overview

Field Value
Gene ID Lj3g3v3189730
Transcript ID Lj3g3v3189730.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356539016|ref|XP_003537996.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF69
2 645 644 0 –
PANTHER
PTHR23315
2 645 644 0 –
ProSiteProfiles
PS51698
258 332 75 44.018
IPR003613
SUPERFAMILY
SSF57850
258 335 78 3.53E-30 –
Pfam
PF04564
259 329 71 7.10E-20
IPR003613
Gene3D
G3DSA:3.30.40.10
261 309 49 3.80E-16
IPR013083
SMART
SM00504
262 325 64 5.50E-33
IPR003613
CDD
cd00162
264 301 38 3.46E-04 –
Gene3D
G3DSA:1.25.10.10
310 642 333 1.00E-73
IPR011989
SUPERFAMILY
SSF48371
357 639 283 6.10E-52
IPR016024
CDD
cd00020
360 466 107 4.09E-16 –
Pfam
PF00514
386 425 40 2.00E-09
IPR000225
SMART
SM00185
386 426 41 2.10E-06
IPR000225
ProSiteProfiles
PS50176
397 439 43 11.497
IPR000225
SMART
SM00185
427 467 41 6.3
IPR000225
CDD
cd00020
434 549 116 8.90E-14 –
ProSiteProfiles
PS50176
438 480 43 8.872
IPR000225
SMART
SM00185
468 508 41 0.075
IPR000225
Pfam
PF00514
469 507 39 5.10E-08
IPR000225
SMART
SM00185
509 549 41 7
IPR000225
Pfam
PF05536
515 646 132 1.30E-06
IPR008709
CDD
cd00020
515 632 118 7.03E-11 –
ProSiteProfiles
PS50176
520 562 43 9.222
IPR000225
SMART
SM00185
550 590 41 18
IPR000225
SMART
SM00185
592 632 41 280
IPR000225
Coils
Coil
630 650 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v3189730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3189730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.