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Lj3g3v3338570.1

Overview

Field Value
Gene ID Lj3g3v3338570
Transcript ID Lj3g3v3338570.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: SWI/SNF complex subunit SWI3D-like [Cicer arietinum] gi|502149174|ref|XP_004507421.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12802
1 73 73 2.70E-298 –
ProSiteProfiles
PS50934
1 77 77 18.266
IPR007526
Pfam
PF04433
1 68 68 7.80E-12
IPR007526
Gene3D
G3DSA:1.10.10.10
1 75 75 3.60E-12
IPR011991
PANTHER
PTHR12802:SF39
1 73 73 2.70E-298 –
SUPERFAMILY
SSF46689
2 69 68 5.11E-16
IPR009057
PANTHER
PTHR12802:SF39
99 286 188 2.70E-298 –
PANTHER
PTHR12802
99 286 188 2.70E-298 –
SUPERFAMILY
SSF57850
140 202 63 8.59E-12 –
SMART
SM00291
142 186 45 8.80E-09
IPR000433
ProSiteProfiles
PS50135
142 188 47 9.114
IPR000433
Pfam
PF00569
145 181 37 2.90E-09
IPR000433
CDD
cd02336
146 190 45 7.51E-22 –
ProSitePatterns
PS01357
148 174 27 –
IPR000433
Gene3D
G3DSA:1.10.10.60
200 243 44 4.10E-08
IPR009057
SUPERFAMILY
SSF46689
200 252 53 8.97E-13
IPR009057
ProSiteProfiles
PS51293
200 251 52 22.982
IPR017884
SMART
SM00717
201 249 49 1.30E-12
IPR001005
Pfam
PF00249
203 245 43 4.10E-12
IPR001005
CDD
cd00167
221 246 26 8.82E-04 –
MobiDBLite
mobidb-lite
267 330 64 – –
PANTHER
PTHR12802
364 520 157 2.70E-298 –
PANTHER
PTHR12802:SF39
364 520 157 2.70E-298 –
MobiDBLite
mobidb-lite
425 456 32 – –
MobiDBLite
mobidb-lite
472 699 228 – –
PANTHER
PTHR12802
692 849 158 2.70E-298 –
PANTHER
PTHR12802:SF39
692 849 158 2.70E-298 –
Pfam
PF16495
724 801 78 2.10E-24
IPR032451
MobiDBLite
mobidb-lite
843 878 36 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v3338570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3338570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.