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Lj3g3v3360940.1

Overview

Field Value
Gene ID Lj3g3v3360940
Transcript ID Lj3g3v3360940.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: adoMet-dependent rRNA methyltransferase spb1-like [Glycine max] gi|356538763|ref|XP_003537870.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10920
1 708 708 1.80E-246
IPR015507
Hamap
MF_01547
4 203 200 29.622
IPR015507
SUPERFAMILY
SSF53335
23 204 182 1.18E-29
IPR029063
Gene3D
G3DSA:3.40.50.150
23 204 182 6.20E-51
IPR029063
Pfam
PF01728
24 202 179 7.40E-50
IPR002877
Pfam
PF11861
237 385 149 1.60E-43
IPR024576
Coils
Coil
357 377 21 – –
Pfam
PF07780
606 708 103 1.10E-29
IPR012920

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001510
Biological process RNA methylation Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v3360940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3360940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.