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Lj3g3v3553970.1

Overview

Field Value
Gene ID Lj3g3v3553970
Transcript ID Lj3g3v3553970.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Cicer arietinum] gi|502144378|ref|XP_004505675.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 – –
PANTHER
PTHR24128:SF11
20 355 336 1.70E-187
IPR030300
PANTHER
PTHR24128
20 355 336 1.70E-187 –
Gene3D
G3DSA:2.40.50.40
59 114 56 6.20E-05 –
SUPERFAMILY
SSF54160
64 118 55 1.15E-08
IPR016197
SMART
SM00298
67 119 53 0.015
IPR000953
CDD
cd00024
70 117 48 0.00631306 –
SUPERFAMILY
SSF48403
112 225 114 4.35E-23
IPR020683
SMART
SM00248
113 142 30 210
IPR002110
ProSiteProfiles
PS50297
113 223 111 24.772
IPR020683
CDD
cd00204
113 225 113 4.80E-22 –
Gene3D
G3DSA:1.25.40.20
115 227 113 1.10E-24
IPR020683
SMART
SM00248
148 177 30 3.9
IPR002110
ProSiteProfiles
PS50088
148 180 33 10.633
IPR002110
Pfam
PF13857
168 223 56 5.30E-11 –
ProSiteProfiles
PS50088
182 214 33 11.06
IPR002110
SMART
SM00248
182 211 30 0.048
IPR002110
SMART
SM00298
257 307 51 5.40E-07
IPR000953
SUPERFAMILY
SSF54160
257 304 48 1.72E-10
IPR016197
Gene3D
G3DSA:2.40.50.40
260 304 45 3.20E-06 –
CDD
cd00024
260 308 49 0.00357183 –
SUPERFAMILY
SSF54160
307 360 54 1.42E-09
IPR016197
CDD
cd00024
307 355 49 1.37E-07 –
Gene3D
G3DSA:2.40.50.40
307 361 55 2.60E-11 –
SMART
SM00298
308 358 51 1.70E-09
IPR000953
ProSiteProfiles
PS50013
309 365 57 11.453
IPR000953
Pfam
PF00385
311 355 45 2.70E-06
IPR023780
MobiDBLite
mobidb-lite
340 377 38 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0009416
Biological process Response to light stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
Subterm of
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of
GO:0045038
Biological process Protein import into chloroplast thylakoid membrane The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma.
Subterm of
GO:0080085
Cellular component Signal recognition particle, chloroplast targeting A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to the chloroplast.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v3553970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3553970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.