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Lj3g3v3627880.1

Overview

Field Value
Gene ID Lj3g3v3627880
Transcript ID Lj3g3v3627880.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: exportin-1-like isoform 1 [Glycine max] gi|356538463|ref|XP_003537723.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11223
1 376 376 0 –
SUPERFAMILY
SSF48371
13 268 256 6.17E-115
IPR016024
Gene3D
G3DSA:1.25.10.10
36 297 262 3.50E-12
IPR011989
Pfam
PF03810
37 103 67 3.60E-14
IPR001494
SMART
SM00913
37 103 67 1.40E-10
IPR001494
ProSiteProfiles
PS50166
37 103 67 15.796
IPR001494
Pfam
PF08389
115 258 144 3.80E-40
IPR013598
SUPERFAMILY
SSF48371
334 375 42 6.17E-115
IPR016024
Gene3D
G3DSA:1.25.10.10
351 399 49 3.50E-12
IPR011989
PANTHER
PTHR11223
406 957 552 0 –
SUPERFAMILY
SSF48371
413 711 299 6.17E-115
IPR016024
Gene3D
G3DSA:1.25.10.10
451 578 128 3.50E-12
IPR011989
Gene3D
G3DSA:1.25.10.10
713 1035 323 2.00E-130
IPR011989
Pfam
PF08767
714 1035 322 4.30E-126
IPR014877
SMART
SM01102
714 1036 323 1.40E-185
IPR014877
SUPERFAMILY
SSF48371
778 1025 248 6.17E-115
IPR016024
PANTHER
PTHR11223
980 1068 89 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005049
Molecular function Nuclear export signal receptor activity Combining with a nuclear export signal (NES) on a cargo to be transported, to mediate transport of a the cargo through the nuclear pore, from the nuclear lumen to the cytoplasm. The cargo can be either a RNA or a protein.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0008536
Molecular function Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v3627880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3627880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.