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Lj3g3v3725550.1

Overview

Field Value
Gene ID Lj3g3v3725550
Transcript ID Lj3g3v3725550.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: branchpoint-bridging protein-like isoform X1 [Cicer arietinum] gi|502169018|ref|XP_004514517.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11208
1 536 536 6.50E-262 –
PANTHER
PTHR11208:SF45
1 536 536 6.50E-262
IPR031150
Pfam
PF16275
10 89 80 1.40E-25
IPR032570
Gene3D
G3DSA:3.30.1370.10
90 212 123 1.50E-41
IPR004088
SUPERFAMILY
SSF54791
93 219 127 6.15E-29
IPR004088
SMART
SM00322
93 185 93 1.50E-09
IPR004087
CDD
cd02395
94 210 117 7.60E-57 –
ProSiteProfiles
PS50084
108 180 73 10.064
IPR004088
Pfam
PF00013
108 181 74 8.70E-07
IPR004088
MobiDBLite
mobidb-lite
138 159 22 – –
SUPERFAMILY
SSF57756
211 257 47 1.49E-07
IPR001878
SMART
SM00343
214 230 17 0.044
IPR001878
Gene3D
G3DSA:4.10.60.10
214 255 42 2.30E-07
IPR001878
ProSiteProfiles
PS50158
215 229 15 8.664
IPR001878
SMART
SM00343
240 256 17 0.3
IPR001878
ProSiteProfiles
PS50158
241 255 15 8.713
IPR001878
MobiDBLite
mobidb-lite
283 311 29 – –
Gene3D
G3DSA:3.30.70.330
327 410 84 5.40E-25
IPR012677
SUPERFAMILY
SSF54928
327 429 103 7.39E-27
IPR012677
ProSiteProfiles
PS50102
331 409 79 18.172
IPR000504
SMART
SM00360
332 405 74 4.00E-23
IPR000504
Pfam
PF00076
333 402 70 1.00E-18
IPR000504
MobiDBLite
mobidb-lite
409 454 46 – –
PRINTS
PR01217
468 480 13 6.00E-10 –
MobiDBLite
mobidb-lite
483 632 150 – –
PRINTS
PR01217
487 503 17 6.00E-10 –
PRINTS
PR01217
540 561 22 6.00E-10 –
PRINTS
PR01217
562 578 17 6.00E-10 –
PRINTS
PR01217
594 619 26 6.00E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0045131
Molecular function Pre-mRNA branch point binding Interacting selectively and non-covalently with a pre-mRNA branch point sequence, located upstream of the 3' splice site.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v3725550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3725550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.