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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0341080 |
| Transcript ID | Lj4g3v0341080.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Cicer arietinum] gi|502142103|ref|XP_004504792.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 238 | 238 | – | – | |
| PANTHER | 113 | 915 | 803 | 0 | – | |
| PANTHER | 113 | 915 | 803 | 0 | – | |
| ProSiteProfiles | 135 | 209 | 75 | 14.298 | ||
| SUPERFAMILY | 136 | 182 | 47 | 1.70E-10 | ||
| Gene3D | 136 | 209 | 74 | 8.60E-13 | – | |
| Pfam | 138 | 205 | 68 | 3.00E-08 | ||
| CDD | 138 | 205 | 68 | 2.30E-09 | ||
| ProSitePatterns | 140 | 169 | 30 | – | ||
| Phobius | 239 | 258 | 20 | – | – | |
| TMHMM | 240 | 259 | 20 | – | – | |
| Phobius | 259 | 263 | 5 | – | – | |
| Phobius | 264 | 283 | 20 | – | – | |
| TMHMM | 272 | 291 | 20 | – | – | |
| Phobius | 284 | 303 | 20 | – | – | |
| TIGRFAM | 286 | 905 | 620 | 9.70E-152 | – | |
| PRINTS | 289 | 308 | 20 | 2.60E-05 | – | |
| Phobius | 304 | 324 | 21 | – | – | |
| TIGRFAM | 304 | 904 | 601 | 2.00E-171 | ||
| TMHMM | 306 | 325 | 20 | – | – | |
| Gene3D | 319 | 474 | 156 | 6.80E-25 | ||
| Phobius | 325 | 329 | 5 | – | – | |
| Phobius | 330 | 347 | 18 | – | – | |
| SUPERFAMILY | 335 | 371 | 37 | 4.18E-09 | – | |
| PRINTS | 337 | 356 | 20 | 2.60E-05 | – | |
| Pfam | 338 | 575 | 238 | 9.20E-57 | ||
| Phobius | 348 | 492 | 145 | – | – | |
| TIGRFAM | 375 | 605 | 231 | 1.20E-31 | ||
| SUPERFAMILY | 387 | 473 | 87 | 7.32E-22 | – | |
| PRINTS | 423 | 437 | 15 | 2.20E-19 | – | |
| SUPERFAMILY | 474 | 578 | 105 | 4.18E-09 | – | |
| TMHMM | 490 | 512 | 23 | – | – | |
| Phobius | 493 | 517 | 25 | – | – | |
| PRINTS | 496 | 510 | 15 | 2.60E-05 | – | |
| Phobius | 518 | 528 | 11 | – | – | |
| TMHMM | 527 | 549 | 23 | – | – | |
| Phobius | 529 | 556 | 28 | – | – | |
| Gene3D | 556 | 600 | 45 | 5.30E-43 | ||
| Phobius | 557 | 854 | 298 | – | – | |
| Pfam | 580 | 808 | 229 | 3.20E-40 | – | |
| SUPERFAMILY | 583 | 602 | 20 | 1.80E-45 | ||
| PRINTS | 584 | 598 | 15 | 2.20E-19 | – | |
| ProSitePatterns | 586 | 592 | 7 | – | ||
| Gene3D | 620 | 721 | 102 | 2.90E-11 | ||
| TIGRFAM | 632 | 874 | 243 | 5.80E-45 | ||
| SUPERFAMILY | 665 | 902 | 238 | 1.80E-45 | ||
| PRINTS | 719 | 730 | 12 | 2.20E-19 | – | |
| Gene3D | 722 | 863 | 142 | 5.30E-43 | ||
| PRINTS | 741 | 751 | 11 | 2.20E-19 | – | |
| PRINTS | 773 | 790 | 18 | 2.60E-05 | – | |
| PRINTS | 795 | 814 | 20 | 2.20E-19 | – | |
| PRINTS | 818 | 830 | 13 | 2.20E-19 | – | |
| SUPERFAMILY | 844 | 873 | 30 | 4.18E-09 | – | |
| Phobius | 855 | 874 | 20 | – | – | |
| TMHMM | 855 | 877 | 23 | – | – | |
| PRINTS | 868 | 882 | 15 | 2.60E-05 | – | |
| Phobius | 875 | 879 | 5 | – | – | |
| Phobius | 880 | 904 | 25 | – | – | |
| TMHMM | 882 | 904 | 23 | – | – | |
| Phobius | 905 | 941 | 37 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj4g3v0341080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0341080.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.