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Lj4g3v0451050.2

Overview

Field Value
Gene ID Lj4g3v0451050
Transcript ID Lj4g3v0451050.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF036603
6 572 567 1.20E-191
IPR017061
PANTHER
PTHR11076
7 134 128 1.00E-300 –
PANTHER
PTHR11076:SF38
7 134 128 1.00E-300 –
SUPERFAMILY
SSF56672
8 305 298 1.87E-72 –
ProSiteProfiles
PS50173
14 254 241 34.913
IPR001126
Pfam
PF00817
17 222 206 1.30E-46
IPR001126
Gene3D
G3DSA:3.30.70.270
82 144 63 6.00E-31 –
Gene3D
G3DSA:3.30.70.270
177 233 57 6.00E-31 –
PANTHER
PTHR11076
177 405 229 1.00E-300 –
PANTHER
PTHR11076:SF38
177 405 229 1.00E-300 –
Gene3D
G3DSA:1.10.150.20
234 306 73 1.60E-13 –
Pfam
PF11799
305 442 138 6.00E-17
IPR017961
SUPERFAMILY
SSF100879
310 438 129 2.67E-24
IPR017961
Gene3D
G3DSA:3.30.1490.100
312 440 129 3.90E-18
IPR017961
PANTHER
PTHR11076
421 497 77 1.00E-300 –
PANTHER
PTHR11076:SF38
421 497 77 1.00E-300 –
MobiDBLite
mobidb-lite
524 574 51 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003684
Molecular function Damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v0451050.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0451050.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.