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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1584860 |
| Transcript ID | Lj4g3v1584860.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like [Cicer arietinum] gi|502152195|ref|XP_004508810.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 12 | 12 | – | – | |
| PANTHER | 7 | 441 | 435 | 0 | – | |
| PANTHER | 7 | 441 | 435 | 0 | – | |
| ProSiteProfiles | 88 | 118 | 31 | 6.752 | ||
| Gene3D | 101 | 211 | 111 | 2.50E-07 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.578 | ||
| TIGRFAM | 127 | 158 | 32 | 1.40E-06 | ||
| Pfam | 147 | 205 | 59 | 6.90E-14 | ||
| ProSiteProfiles | 159 | 193 | 35 | 11.981 | ||
| TIGRFAM | 162 | 194 | 33 | 1.10E-07 | ||
| ProSiteProfiles | 194 | 229 | 36 | 11.772 | ||
| TIGRFAM | 197 | 231 | 35 | 1.60E-05 | ||
| Pfam | 218 | 278 | 61 | 1.00E-13 | ||
| ProSiteProfiles | 230 | 264 | 35 | 12.671 | ||
| TIGRFAM | 232 | 266 | 35 | 1.00E-07 | ||
| ProSiteProfiles | 265 | 299 | 35 | 9.646 | ||
| TIGRFAM | 268 | 301 | 34 | 7.00E-04 | ||
| Pfam | 299 | 344 | 46 | 1.90E-10 | ||
| ProSiteProfiles | 300 | 334 | 35 | 11.707 | ||
| TIGRFAM | 303 | 336 | 34 | 1.20E-06 | ||
| Gene3D | 303 | 429 | 127 | 2.50E-07 | ||
| ProSiteProfiles | 335 | 369 | 35 | 10.775 | ||
| TIGRFAM | 338 | 370 | 33 | 2.60E-06 | ||
| Pfam | 369 | 416 | 48 | 9.70E-10 | ||
| ProSiteProfiles | 370 | 404 | 35 | 11.246 | ||
| TIGRFAM | 373 | 405 | 33 | 1.20E-07 | ||
| ProSiteProfiles | 405 | 439 | 35 | 10.72 | ||
| TIGRFAM | 408 | 440 | 33 | 1.30E-04 | ||
| ProSiteProfiles | 440 | 474 | 35 | 8.901 | ||
| Gene3D | 441 | 615 | 175 | 1.10E-05 | ||
| Pfam | 443 | 471 | 29 | 0.064 | ||
| ProSiteProfiles | 475 | 509 | 35 | 9.558 | ||
| PANTHER | 477 | 692 | 216 | 0 | – | |
| PANTHER | 477 | 692 | 216 | 0 | – | |
| TIGRFAM | 478 | 510 | 33 | 2.90E-04 | ||
| Pfam | 478 | 505 | 28 | 5.00E-04 | ||
| Pfam | 510 | 558 | 49 | 1.50E-07 | ||
| ProSiteProfiles | 510 | 544 | 35 | 11.027 | ||
| TIGRFAM | 513 | 546 | 34 | 1.60E-05 | ||
| ProSiteProfiles | 545 | 579 | 35 | 9.657 | ||
| ProSiteProfiles | 580 | 614 | 35 | 7.509 | ||
| Pfam | 583 | 609 | 27 | 0.24 | ||
| ProSiteProfiles | 651 | 685 | 35 | 7.191 | ||
| Gene3D | 653 | 679 | 27 | 1.10E-05 | ||
| SMART | 694 | 783 | 90 | 6.90E-08 | ||
| ProSiteProfiles | 697 | 786 | 90 | 13.427 | ||
| MobiDBLite | 811 | 848 | 38 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v1584860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1584860.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.