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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1983620 |
| Transcript ID | Lj4g3v1983620.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Signal recognition particle receptor subunit alpha [Medicago truncatula] gi|357480047|ref|XP_003610309.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 117 | 117 | 1.56E-34 | ||
| Phobius | 1 | 4 | 4 | – | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 5 | 16 | 12 | – | – | |
| Phobius | 17 | 21 | 5 | – | – | |
| Phobius | 22 | 615 | 594 | – | – | |
| Pfam | 25 | 292 | 268 | 3.00E-64 | ||
| MobiDBLite | 128 | 172 | 45 | – | – | |
| MobiDBLite | 238 | 306 | 69 | – | – | |
| PANTHER | 297 | 615 | 319 | 2.60E-180 | – | |
| PANTHER | 297 | 615 | 319 | 2.60E-180 | – | |
| SMART | 306 | 388 | 83 | 0.0036 | ||
| SUPERFAMILY | 309 | 390 | 82 | 1.00E-11 | ||
| Gene3D | 310 | 390 | 81 | 2.00E-12 | – | |
| Pfam | 311 | 379 | 69 | 2.50E-07 | ||
| Gene3D | 405 | 614 | 210 | 5.20E-73 | ||
| SUPERFAMILY | 406 | 614 | 209 | 1.52E-41 | ||
| SMART | 408 | 548 | 141 | 1.40E-09 | ||
| SMART | 409 | 615 | 207 | 3.80E-85 | ||
| Pfam | 410 | 614 | 205 | 2.50E-56 | ||
| ProSitePatterns | 588 | 601 | 14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Signal recognition particle binding | Interacting selectively and non-covalently with the signal recognition particle. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Signal recognition particle receptor complex | A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of Lj4g3v1983620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1983620.1, powered by CORGI.
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