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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2263980 |
| Transcript ID | Lj4g3v2263980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA replication licensing factor mcm2-like [Glycine max] gi|356521757|ref|XP_003529518.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 189 | 189 | – | – | |
| Pfam | 34 | 185 | 152 | 8.90E-19 | ||
| PANTHER | 176 | 928 | 753 | 0 | – | |
| PANTHER | 176 | 928 | 753 | 0 | ||
| Gene3D | 212 | 309 | 98 | 2.20E-11 | – | |
| Pfam | 214 | 307 | 94 | 1.40E-15 | ||
| SUPERFAMILY | 215 | 462 | 248 | 4.45E-59 | ||
| SMART | 310 | 824 | 515 | 1.10E-285 | ||
| Pfam | 313 | 440 | 128 | 1.50E-34 | ||
| Gene3D | 313 | 340 | 28 | 3.90E-24 | – | |
| PRINTS | 323 | 340 | 18 | 1.30E-28 | ||
| PRINTS | 346 | 358 | 13 | 1.30E-28 | ||
| PRINTS | 381 | 395 | 15 | 1.30E-28 | ||
| Gene3D | 392 | 466 | 75 | 3.90E-24 | – | |
| PRINTS | 442 | 453 | 12 | 1.30E-28 | ||
| PRINTS | 457 | 468 | 12 | 1.30E-28 | ||
| Pfam | 481 | 823 | 343 | 2.10E-140 | ||
| ProSiteProfiles | 493 | 699 | 207 | 92.346 | ||
| SUPERFAMILY | 503 | 827 | 325 | 6.84E-36 | ||
| Gene3D | 503 | 682 | 180 | 9.10E-41 | ||
| PRINTS | 534 | 549 | 16 | 2.10E-32 | ||
| PRINTS | 594 | 608 | 15 | 2.10E-32 | ||
| ProSitePatterns | 602 | 610 | 9 | – | ||
| PRINTS | 622 | 635 | 14 | 2.10E-32 | ||
| PRINTS | 646 | 658 | 13 | 2.10E-32 | ||
| PRINTS | 673 | 681 | 9 | 2.10E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Cellular component | MCM complex | A hexameric protein complex required for the initiation and regulation of DNA replication. | ||
| Biological process | Negative regulation of DNA helicase activity | Any process that stops, prevents or reduces the frequency, rate or extent of DNA helicase activity. |
Expression pattern of Lj4g3v2263980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2263980.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.