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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029016
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 36 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.467s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0046839.1
n.a. PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1| chr0 15593051 15597615 +
3 domain predictions
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Lj0g3v0163479.1
n.a. PREDICTED: ethylene receptor 2-like [Cicer arietinum] gi|502115883|ref|XP_004495309.1| chr0 77304936 77309225 +
3 domain predictions
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Lj0g3v0302209.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr0 157184005 157189594 +
3 domain predictions
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Lj1g3v4865380.1
n.a. PREDICTED: ethylene response sensor 1-like isoform X1 [Cicer arietinum] gi|502112644|ref|XP_004494397.1| chr1 59041645 59046222 +
3 domain predictions
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Lj1g3v5020730.1
n.a. Ethylene receptor [Medicago truncatula] gi|357512375|ref|XP_003626476.1| chr1 61035843 61040666 -
3 domain predictions
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Lj1g3v5020740.2
n.a. Ethylene receptor [Medicago truncatula] gi|357512375|ref|XP_003626476.1| chr1 61036440 61040602 -
3 domain predictions
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Lj3g3v0461750.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984353 -
3 domain predictions
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Lj3g3v0461750.2
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984648 -
3 domain predictions
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Lj4g3v2265030.1
n.a. phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| chr4 31439564 31445894 +
3 domain predictions
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Lj4g3v2295880.1
n.a. phytochrome E, partial [Lotus japonicus] gi|477504399|dbj|BAN14709.1| chr4 32017732 32020941 +
3 domain predictions
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Lj5g3v1329790.1
n.a. PREDICTED: protein EIN4-like [Glycine max] gi|356574871|ref|XP_003555567.1| chr5 20506148 20509847 +
3 domain predictions
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Lj5g3v1533480.1
n.a. phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| chr5 22502927 22510099 -
2 domain predictions
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Lj6g3v0056680.1
n.a. PREDICTED: ethylene receptor 2-like [Cicer arietinum] gi|502115883|ref|XP_004495309.1| chr6 832619 836839 -
3 domain predictions
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Lj6g3v1093490.1
n.a. PREDICTED: phytochrome E-like [Glycine max] gi|356532946|ref|XP_003535030.1| chr6 13394709 13400674 -
3 domain predictions
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LotjaGi1g1v0762500.1
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133514685 133519558 +
2 domain predictions
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LotjaGi1g1v0762500.2
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133515378 133519076 +
2 domain predictions
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LotjaGi1g1v0786100.1
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135852775 135857792 -
2 domain predictions
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LotjaGi1g1v0786100.2
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853281 135857597 -
2 domain predictions
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LotjaGi1g1v0786100.3
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853494 135857299 -
2 domain predictions
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LotjaGi3g1v0054100.1
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632820 5638974 -
2 domain predictions
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LotjaGi3g1v0054100.2
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632920 5639127 -
2 domain predictions
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LotjaGi3g1v0054100.3
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9M7M1|ETR1_PRUPE Ethylene receptor; TrEMBL-Plants: tr|K7LB32|K7LB32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
2 domain predictions
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LotjaGi3g1v0054100.4
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|A0A1J7HIG6|A0A1J7HIG6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
2 domain predictions
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LotjaGi5g1v0182400.1
n.a. Ethylene receptor; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400 LjG1.1_chr5 46462080 46466555 +
2 domain predictions
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LotjaGi5g1v0182400.2
n.a. Ethylene receptor; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400 LjG1.1_chr5 46463053 46466053 +
2 domain predictions
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LotjaGi5g1v0206300.1
n.a. Ethylene receptor like-protein; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|A0A0B2Q4A5|A0A0B2Q4A5_GLYSO Protein EIN4; Found in the gene: LotjaGi5g1v0206300 LjG1.1_chr5 50864567 50868817 +
2 domain predictions
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LotjaGi5g1v0235100.1
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323062 54330218 -
2 domain predictions
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LotjaGi5g1v0235100.2
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328628 -
2 domain predictions
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LotjaGi5g1v0235100.3
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328849 -
2 domain predictions
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LotjaGi5g1v0235100.4
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328859 -
2 domain predictions
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LotjaGi6g1v0007200.1
n.a. Ethylene receptor family protein; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0007200 LjG1.1_chr6 1465201 1469916 -
2 domain predictions
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LotjaGi6g1v0007200.2
n.a. Ethylene receptor family protein; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0007200 LjG1.1_chr6 1465263 1469302 -
2 domain predictions
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LotjaGi6g1v0210900.1
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50829966 50836297 -
2 domain predictions
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LotjaGi6g1v0210900.2
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50831797 50836297 -
2 domain predictions
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LotjaGi6g1v0210900.3
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50832024 50836033 -
2 domain predictions
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LotjaGi6g1v0258900.1
n.a. Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 LjG1.1_chr6 57180524 57188840 +
2 domain predictions
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