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IPR013515 is a Phytochrome, central region.
<p>Phytochrome belongs to a family of plant photoreceptors that mediate physiological and developmental responses to changes in red and far-red light conditions [[cite:PUB00000104]]. Besides plants, they are widely represented in both photosynthetic and non-photosynthetic bacteria and are known in a variety of fungi. The protein undergoes reversible photochemical conversion between a biologically-inactive red light-absorbing form and the active far-red light-absorbing form. Phytochrome is a dimer of identical 124kDa subunits, each of which contains a linear tetrapyrrole chromophore, covalently-attached via a Cys residue.</p> <p>This domain is found in the central region of phytochrome proteins. It is structurally related to the GAF domain [interpro:IPR003018], which is generally located immediately N-terminal to this domain, but it carries an additional tongue-like hairpin loop between the fifth β-sheet and the sixth α-helix which functions to seal the chromophore pocket and stabilise the photoactivated far-red-absorbing state (Pfr) [[cite:PUB00049696], [cite:PUB00057239]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Detection of visible light | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. | ||
| Biological process | Protein-chromophore linkage | The covalent or noncovalent attachment of a chromophore to a protein. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1| | 38 | ||
| – | Phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| | 44 | ||
| – | Phytochrome E, partial [Lotus japonicus] gi|477504399|dbj|BAN14709.1| | 26 | ||
| – | Phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| | 40 | ||
| – | PREDICTED: phytochrome E-like [Glycine max] gi|356532946|ref|XP_003535030.1| | 40 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 | 44 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 | 33 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 | 44 | ||
| – | Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 | 49 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 7.69 |