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Lj4g3v2692430.1

Overview

Field Value
Gene ID Lj4g3v2692430
Transcript ID Lj4g3v2692430.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent DNA helicase Q-like 4A-like isoform X1 [Cicer arietinum] gi|502076854|ref|XP_004485478.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13710:SF94
18 196 179 0 –
PANTHER
PTHR13710
18 196 179 0 –
Coils
Coil
263 283 21 – –
PANTHER
PTHR13710
365 732 368 0 –
PANTHER
PTHR13710:SF94
365 732 368 0 –
Gene3D
G3DSA:3.40.50.300
384 592 209 8.50E-52
IPR027417
TIGRFAM
TIGR00614
397 732 336 2.60E-146
IPR004589
SMART
SM00487
401 604 204 7.90E-33
IPR014001
Pfam
PF00270
407 575 169 1.00E-18
IPR011545
ProSiteProfiles
PS51192
413 588 176 22.795
IPR014001
CDD
cd00046
421 569 149 3.80E-19 –
SUPERFAMILY
SSF52540
445 731 287 6.22E-57
IPR027417
ProSitePatterns
PS00690
527 536 10 –
IPR002464
Gene3D
G3DSA:3.40.50.300
593 732 140 4.40E-49
IPR027417
CDD
cd00079
601 727 127 1.48E-33 –
Pfam
PF00271
612 718 107 1.40E-17
IPR001650
ProSiteProfiles
PS51194
613 732 120 19.532
IPR001650
SMART
SM00490
638 719 82 4.70E-28
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006310
Biological process DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj4g3v2692430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2692430.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.