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Lj4g3v3113400.1

Overview

Field Value
Gene ID Lj4g3v3113400
Transcript ID Lj4g3v3113400.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] gi|449457536|ref|XP_004146504.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd01720
1 81 81 6.50E-52 –
SMART
SM00651
1 79 79 6.60E-18
IPR001163
PANTHER
PTHR12777
1 82 82 2.40E-72
IPR027248
Gene3D
G3DSA:2.30.30.100
2 82 81 1.50E-34 –
SUPERFAMILY
SSF50182
2 80 79 1.52E-23
IPR010920
Pfam
PF01423
4 77 74 2.50E-19
IPR001163

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008380
Biological process RNA splicing The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
Subterm of
GO:0030532
Cellular component Small nuclear ribonucleoprotein complex A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v3113400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3113400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.