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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1494630 |
| Transcript ID | Lj5g3v1494630.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: mitochondrial Rho GTPase 1-like [Glycine max] gi|356576775|ref|XP_003556505.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 617 | 617 | – | – | |
| PANTHER | 2 | 330 | 329 | 5.20E-204 | – | |
| PANTHER | 2 | 330 | 329 | 5.20E-204 | – | |
| ProSiteProfiles | 10 | 162 | 153 | 8.85 | ||
| PIRSF | 13 | 641 | 629 | 4.10E-251 | ||
| Gene3D | 17 | 183 | 167 | 9.70E-28 | ||
| PRINTS | 17 | 38 | 22 | 1.10E-09 | – | |
| SUPERFAMILY | 17 | 215 | 199 | 8.77E-28 | ||
| SMART | 17 | 182 | 166 | 1.20E-05 | – | |
| Pfam | 18 | 179 | 162 | 1.40E-13 | ||
| SMART | 19 | 182 | 164 | 2.30E-09 | – | |
| PRINTS | 118 | 131 | 14 | 1.10E-09 | – | |
| PRINTS | 157 | 179 | 23 | 1.10E-09 | – | |
| SUPERFAMILY | 197 | 281 | 85 | 4.37E-16 | ||
| ProSiteProfiles | 197 | 232 | 36 | 7.233 | ||
| Gene3D | 198 | 274 | 77 | 4.90E-06 | ||
| ProSitePatterns | 210 | 222 | 13 | – | ||
| Pfam | 232 | 316 | 85 | 5.90E-32 | ||
| Gene3D | 309 | 423 | 115 | 3.50E-05 | ||
| ProSiteProfiles | 316 | 351 | 36 | 10.19 | ||
| SUPERFAMILY | 317 | 385 | 69 | 4.37E-16 | ||
| Pfam | 353 | 421 | 69 | 5.20E-19 | ||
| ProSiteProfiles | 420 | 641 | 222 | 11.24 | ||
| CDD | 423 | 607 | 185 | 1.37E-66 | – | |
| SUPERFAMILY | 423 | 599 | 177 | 2.38E-23 | ||
| Gene3D | 424 | 608 | 185 | 2.10E-19 | ||
| Pfam | 430 | 567 | 138 | 3.30E-06 | ||
| Phobius | 618 | 639 | 22 | – | – | |
| TMHMM | 618 | 640 | 23 | – | – | |
| Phobius | 640 | 641 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Mitochondrion organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. | ||
| Cellular component | Integral component of mitochondrial outer membrane | The component of the mitochondrial outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj5g3v1494630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1494630.1, powered by CORGI.
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