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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1496740 |
| Transcript ID | Lj5g3v1496740.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ATP-dependent DNA helicase Q4 [Medicago truncatula] gi|357441723|ref|XP_003591139.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 52 | 46 | 1.70E-05 | ||
| ProSiteProfiles | 7 | 47 | 41 | 10.595 | ||
| Gene3D | 8 | 46 | 39 | 1.20E-04 | – | |
| CDD | 13 | 42 | 30 | 0.009832 | – | |
| MobiDBLite | 48 | 95 | 48 | – | – | |
| PANTHER | 132 | 369 | 238 | 1.80E-137 | – | |
| PANTHER | 132 | 369 | 238 | 1.80E-137 | – | |
| Gene3D | 154 | 352 | 199 | 4.20E-46 | ||
| SUPERFAMILY | 156 | 350 | 195 | 8.50E-34 | ||
| TIGRFAM | 160 | 369 | 210 | 8.30E-66 | ||
| SMART | 166 | 371 | 206 | 8.40E-25 | ||
| Pfam | 173 | 340 | 168 | 7.70E-18 | ||
| ProSiteProfiles | 178 | 354 | 177 | 21.204 | ||
| CDD | 185 | 335 | 151 | 1.60E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of Lj5g3v1496740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1496740.1, powered by CORGI.
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