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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1533400 |
| Transcript ID | Lj5g3v1533400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: flap endonuclease 1-like isoform X3 [Cicer arietinum] gi|502117445|ref|XP_004495823.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 124 | 124 | 2.10E-39 | ||
| SUPERFAMILY | 1 | 142 | 142 | 1.32E-41 | ||
| Hamap | 1 | 255 | 255 | 109.411 | ||
| PANTHER | 1 | 290 | 290 | 1.00E-150 | – | |
| CDD | 1 | 254 | 254 | 1.98E-87 | ||
| MobiDBLite | 1 | 20 | 20 | – | – | |
| PANTHER | 1 | 290 | 290 | 1.00E-150 | ||
| Coils | 7 | 27 | 21 | – | – | |
| PRINTS | 54 | 71 | 18 | 3.30E-23 | ||
| Pfam | 55 | 142 | 88 | 4.70E-32 | ||
| SMART | 55 | 127 | 73 | 2.10E-34 | ||
| ProSitePatterns | 58 | 72 | 15 | – | ||
| PRINTS | 75 | 95 | 21 | 3.30E-23 | ||
| Gene3D | 125 | 191 | 67 | 3.80E-16 | – | |
| SUPERFAMILY | 127 | 262 | 136 | 1.50E-40 | ||
| SMART | 129 | 162 | 34 | 6.50E-13 | ||
| CDD | 130 | 198 | 69 | 4.72E-42 | – | |
| PRINTS | 132 | 147 | 16 | 3.30E-23 | ||
| MobiDBLite | 242 | 290 | 49 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. |
Expression pattern of Lj5g3v1533400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1533400.3, powered by CORGI.
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