Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v2240980.2

Overview

Field Value
Gene ID Lj5g3v2240980
Transcript ID Lj5g3v2240980.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Leucine-rich repeat family protein / protein kinase family protein [Medicago truncatula] gi|357438999|ref|XP_003589776.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 84 84 – –
Gene3D
G3DSA:3.80.10.10
2 44 43 6.20E-10
IPR032675
PANTHER
PTHR27000:SF143
2 419 418 3.90E-255 –
PANTHER
PTHR27000
2 419 418 3.90E-255 –
Pfam
PF13855
2 44 43 1.20E-06
IPR001611
SUPERFAMILY
SSF52058
2 45 44 1.17E-09
IPR032675
ProSiteProfiles
PS51450
2 22 21 7.227
IPR001611
ProSiteProfiles
PS51450
25 47 23 5.448
IPR001611
Gene3D
G3DSA:2.60.120.200
78 156 79 6.30E-08
IPR013320
Phobius
TRANSMEMBRANE
85 110 26 – –
TMHMM
TMhelix
86 108 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
111 428 318 – –
SUPERFAMILY
SSF56112
133 420 288 3.28E-66
IPR011009
ProSiteProfiles
PS50011
151 421 271 33.291
IPR000719
Pfam
PF00069
151 418 268 6.10E-43
IPR000719
ProSitePatterns
PS00107
157 180 24 –
IPR017441
Gene3D
G3DSA:3.30.200.20
157 215 59 3.70E-20 –
Gene3D
G3DSA:1.10.510.10
216 422 207 3.90E-40 –
ProSitePatterns
PS00109
275 287 13 –
IPR008266

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v2240980.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2240980.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.