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Lj5g3v2290070.2

Overview

Field Value
Gene ID Lj5g3v2290070
Transcript ID Lj5g3v2290070.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein CLP1 homolog [Glycine max] gi|356536520|ref|XP_003536785.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 – –
PANTHER
PTHR12755
23 439 417 3.40E-160 –
Hamap
MF_03035
23 438 416 29.249
IPR028606
Pfam
PF16573
27 118 92 5.40E-31
IPR032324
MobiDBLite
mobidb-lite
115 144 30 – –
Gene3D
G3DSA:3.40.50.300
131 175 45 3.90E-06
IPR027417
SUPERFAMILY
SSF52540
132 241 110 6.23E-11
IPR027417
Pfam
PF16575
138 327 190 1.40E-66
IPR032319
Pfam
PF06807
332 439 108 8.70E-30
IPR010655

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005849
Cellular component MRNA cleavage factor complex Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
Subterm of
GO:0031124
Biological process MRNA 3'-end processing Any process involved in forming the mature 3' end of an mRNA molecule.
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj5g3v2290070.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2290070.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.