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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2302940 |
| Transcript ID | Lj5g3v2302940.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Glycine max] gi|356576925|ref|XP_003556580.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 489 | 489 | 7.70E-154 | – | |
| PIRSF | 1 | 489 | 489 | 3.70E-77 | ||
| PANTHER | 1 | 489 | 489 | 7.70E-154 | ||
| Pfam | 2 | 127 | 126 | 9.40E-25 | ||
| Gene3D | 4 | 121 | 118 | 1.20E-26 | ||
| SUPERFAMILY | 5 | 123 | 119 | 4.78E-19 | ||
| TIGRFAM | 6 | 487 | 482 | 1.20E-73 | ||
| SUPERFAMILY | 126 | 402 | 277 | 2.35E-57 | ||
| CDD | 126 | 402 | 277 | 6.32E-76 | – | |
| Pfam | 136 | 334 | 199 | 2.70E-35 | ||
| Gene3D | 158 | 198 | 41 | 1.70E-04 | ||
| SMART | 179 | 322 | 144 | 1.30E-29 | ||
| Gene3D | 199 | 307 | 109 | 4.40E-32 | ||
| Gene3D | 309 | 408 | 100 | 4.90E-25 | ||
| Pfam | 348 | 430 | 83 | 1.30E-17 | ||
| SUPERFAMILY | 442 | 487 | 46 | 1.36E-08 | – | |
| SMART | 453 | 487 | 35 | 1.30E-05 | ||
| Gene3D | 453 | 487 | 35 | 3.30E-10 | ||
| Pfam | 453 | 486 | 34 | 2.00E-08 | ||
| ProSiteProfiles | 453 | 487 | 35 | 9.647 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Telomere maintenance | Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | Damaged DNA binding | Interacting selectively and non-covalently with damaged DNA. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Double-strand break repair via nonhomologous end joining | The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear. | ||
| Molecular function | Telomeric DNA binding | Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end. | ||
| Cellular component | Ku70:Ku80 complex | Heterodimeric protein complex composed of a 70 kDa and a 80 kDa subunit, binds DNA through a channel formed by the heterodimer. Functions in DNA double stranded break repair, chromosome maintenance, transcription regulation, V(D)J recombination, and activation of DNA-PK. |
Expression pattern of Lj5g3v2302940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2302940.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.