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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0365860 |
| Transcript ID | Lj6g3v0365860.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357460663|ref|XP_003600613.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 323 | 316 | 3.50E-99 | – | |
| PANTHER | 8 | 323 | 316 | 3.50E-99 | – | |
| Gene3D | 11 | 70 | 60 | 6.00E-07 | ||
| SUPERFAMILY | 14 | 71 | 58 | 1.65E-05 | ||
| CDD | 17 | 62 | 46 | 6.34E-14 | – | |
| SMART | 17 | 63 | 47 | 3.90E-05 | ||
| Coils | 159 | 179 | 21 | – | – | |
| MobiDBLite | 176 | 198 | 23 | – | – | |
| Gene3D | 223 | 312 | 90 | 4.40E-23 | ||
| SUPERFAMILY | 225 | 313 | 89 | 3.92E-22 | ||
| Pfam | 239 | 307 | 69 | 6.50E-14 | ||
| ProSiteProfiles | 359 | 488 | 130 | 28.139 | ||
| SMART | 359 | 465 | 107 | 1.60E-28 | ||
| SUPERFAMILY | 360 | 485 | 126 | 2.75E-23 | ||
| Pfam | 364 | 463 | 100 | 2.60E-16 | ||
| PANTHER | 365 | 476 | 112 | 3.50E-99 | – | |
| PANTHER | 365 | 476 | 112 | 3.50E-99 | – | |
| PANTHER | 499 | 547 | 49 | 3.50E-99 | – | |
| PANTHER | 499 | 547 | 49 | 3.50E-99 | – | |
| Coils | 616 | 636 | 21 | – | – | |
| MobiDBLite | 622 | 659 | 38 | – | – | |
| MobiDBLite | 675 | 708 | 34 | – | – | |
| Coils | 704 | 724 | 21 | – | – | |
| Coils | 798 | 832 | 35 | – | – | |
| Coils | 847 | 881 | 35 | – | – | |
| Coils | 889 | 916 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0365860.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0365860.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.