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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0781000 |
| Transcript ID | Lj6g3v0781000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356524338|ref|XP_003530786.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | – | – | |
| PANTHER | 1 | 624 | 624 | 0 | – | |
| PANTHER | 1 | 624 | 624 | 0 | – | |
| Phobius | 1 | 38 | 38 | – | – | |
| Phobius | 39 | 58 | 20 | – | – | |
| TMHMM | 39 | 58 | 20 | – | – | |
| Phobius | 59 | 104 | 46 | – | – | |
| Phobius | 105 | 130 | 26 | – | – | |
| Gene3D | 111 | 408 | 298 | 8.70E-25 | – | |
| SUPERFAMILY | 111 | 408 | 298 | 4.84E-30 | ||
| TMHMM | 113 | 135 | 23 | – | – | |
| Pfam | 115 | 382 | 268 | 1.70E-21 | ||
| ProSiteProfiles | 115 | 395 | 281 | 30.183 | ||
| Phobius | 131 | 149 | 19 | – | – | |
| Phobius | 150 | 168 | 19 | – | – | |
| Phobius | 169 | 179 | 11 | – | – | |
| Phobius | 180 | 199 | 20 | – | – | |
| Phobius | 200 | 239 | 40 | – | – | |
| Phobius | 240 | 268 | 29 | – | – | |
| TMHMM | 251 | 273 | 23 | – | – | |
| Phobius | 269 | 330 | 62 | – | – | |
| Phobius | 331 | 364 | 34 | – | – | |
| TMHMM | 340 | 362 | 23 | – | – | |
| Phobius | 365 | 632 | 268 | – | – | |
| SUPERFAMILY | 426 | 624 | 199 | 7.44E-50 | ||
| CDD | 429 | 624 | 196 | 1.82E-111 | – | |
| ProSiteProfiles | 429 | 632 | 204 | 17.494 | ||
| Gene3D | 430 | 625 | 196 | 3.10E-58 | ||
| Pfam | 447 | 581 | 135 | 7.00E-22 | ||
| SMART | 456 | 632 | 177 | 6.70E-10 | ||
| ProSitePatterns | 554 | 568 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v0781000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0781000.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.