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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0933510 |
| Transcript ID | Lj6g3v0933510.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | E3 ubiquitin-protein ligase synoviolin [Medicago truncatula] gi|357481129|ref|XP_003610850.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| PANTHER | 1 | 369 | 369 | 1.20E-167 | – | |
| PANTHER | 1 | 369 | 369 | 1.20E-167 | ||
| TMHMM | 7 | 24 | 18 | – | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 27 | 8 | – | – | |
| Phobius | 28 | 42 | 15 | – | – | |
| TMHMM | 39 | 61 | 23 | – | – | |
| Phobius | 43 | 60 | 18 | – | – | |
| Phobius | 61 | 98 | 38 | – | – | |
| Phobius | 99 | 119 | 21 | – | – | |
| TMHMM | 99 | 121 | 23 | – | – | |
| Phobius | 120 | 138 | 19 | – | – | |
| TMHMM | 136 | 158 | 23 | – | – | |
| Phobius | 139 | 159 | 21 | – | – | |
| Phobius | 160 | 170 | 11 | – | – | |
| TMHMM | 171 | 193 | 23 | – | – | |
| Phobius | 171 | 195 | 25 | – | – | |
| Phobius | 196 | 224 | 29 | – | – | |
| TMHMM | 224 | 246 | 23 | – | – | |
| Phobius | 225 | 246 | 22 | – | – | |
| Phobius | 247 | 549 | 303 | – | – | |
| SUPERFAMILY | 272 | 336 | 65 | 9.06E-21 | – | |
| Gene3D | 281 | 334 | 54 | 3.60E-16 | ||
| Pfam | 291 | 330 | 40 | 6.70E-11 | ||
| CDD | 291 | 333 | 43 | 2.36E-13 | – | |
| ProSiteProfiles | 292 | 330 | 39 | 12.622 | ||
| SMART | 292 | 329 | 38 | 7.60E-04 | ||
| MobiDBLite | 340 | 380 | 41 | – | – | |
| PANTHER | 484 | 533 | 50 | 1.20E-167 | – | |
| PANTHER | 484 | 533 | 50 | 1.20E-167 | ||
| MobiDBLite | 503 | 549 | 47 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Hrd1p ubiquitin ligase complex | A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal and membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. In mammals, this complex contains the ubiquitin ligase HRD1 (Synoviolin) or AMFR (gp78). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Biological process | Ubiquitin-dependent ERAD pathway | The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. | ||
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of Lj6g3v0933510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0933510.1, powered by CORGI.
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