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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0948300 |
| Transcript ID | Lj6g3v0948300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gi|508785674|gb|EOY32930.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 1 | 166 | 166 | 0 | – | |
| PANTHER | 1 | 166 | 166 | 0 | – | |
| Gene3D | 24 | 139 | 116 | 2.10E-41 | ||
| CDD | 25 | 135 | 111 | 3.89E-53 | – | |
| SUPERFAMILY | 26 | 134 | 109 | 6.47E-28 | ||
| Pfam | 28 | 134 | 107 | 1.20E-06 | ||
| MobiDBLite | 139 | 196 | 58 | – | – | |
| PANTHER | 184 | 688 | 505 | 0 | – | |
| PANTHER | 184 | 688 | 505 | 0 | – | |
| SUPERFAMILY | 272 | 663 | 392 | 4.32E-97 | ||
| Gene3D | 273 | 662 | 390 | 4.00E-105 | ||
| ProSiteProfiles | 273 | 334 | 62 | 11.63 | ||
| PRINTS | 318 | 331 | 14 | 7.80E-15 | ||
| ProSitePatterns | 321 | 331 | 11 | – | ||
| Pfam | 335 | 383 | 49 | 2.80E-12 | ||
| ProSiteProfiles | 335 | 386 | 52 | 15.107 | ||
| PRINTS | 337 | 353 | 17 | 7.80E-15 | ||
| Pfam | 386 | 438 | 53 | 2.40E-09 | ||
| PRINTS | 387 | 403 | 17 | 7.80E-15 | ||
| ProSiteProfiles | 387 | 441 | 55 | 14.544 | ||
| ProSitePatterns | 428 | 438 | 11 | – | ||
| ProSiteProfiles | 442 | 493 | 52 | 11.449 | ||
| Pfam | 443 | 490 | 48 | 6.50E-12 | ||
| PRINTS | 444 | 458 | 15 | 7.80E-15 | ||
| ProSitePatterns | 480 | 490 | 11 | – | ||
| Pfam | 505 | 554 | 50 | 6.20E-13 | ||
| ProSiteProfiles | 506 | 557 | 52 | 15.429 | ||
| PRINTS | 547 | 565 | 19 | 7.80E-15 | ||
| Pfam | 557 | 606 | 50 | 6.70E-08 | ||
| ProSiteProfiles | 558 | 609 | 52 | 13.338 | ||
| PRINTS | 605 | 626 | 22 | 7.80E-15 | ||
| ProSiteProfiles | 610 | 661 | 52 | 14.705 | ||
| Pfam | 611 | 658 | 48 | 1.90E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj6g3v0948300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0948300.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.