Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1150710.1

Overview

Field Value
Gene ID Lj6g3v1150710
Transcript ID Lj6g3v1150710.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 50 50 – –
PANTHER
PTHR11685
39 331 293 4.60E-137
IPR031127
PANTHER
PTHR11685:SF149
39 331 293 4.60E-137 –
Gene3D
G3DSA:3.30.40.10
118 189 72 1.30E-06
IPR013083
SUPERFAMILY
SSF57850
122 204 83 3.53E-16 –
ProSiteProfiles
PS50089
127 173 47 9.952
IPR001841
Pfam
PF00097
127 172 46 3.60E-05
IPR018957
SMART
SM00184
127 174 48 0.011
IPR001841
ProSitePatterns
PS00518
145 154 10 –
IPR017907
SMART
SM00647
195 257 63 1.90E-12
IPR002867
SUPERFAMILY
SSF57850
203 262 60 5.65E-08 –
Pfam
PF01485
210 257 48 7.90E-10
IPR002867
SMART
SM00647
267 329 63 0.039
IPR002867
SUPERFAMILY
SSF57850
268 329 62 1.41E-13 –
Pfam
PF01485
276 326 51 2.90E-07
IPR002867
SMART
SM00184
287 329 43 7.1
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v1150710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1150710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.