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Lj6g3v1150730.1

Overview

Field Value
Gene ID Lj6g3v1150730
Transcript ID Lj6g3v1150730.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11685
57 226 170 4.00E-88
IPR031127
PANTHER
PTHR11685:SF149
57 226 170 4.00E-88 –
SUPERFAMILY
SSF57850
61 140 80 1.55E-15 –
Gene3D
G3DSA:3.30.40.10
63 125 63 3.30E-06
IPR013083
ProSiteProfiles
PS50089
65 111 47 9.642
IPR001841
Pfam
PF00097
65 110 46 1.10E-04
IPR018957
ProSitePatterns
PS00518
83 92 10 –
IPR017907
SMART
SM00647
133 195 63 1.70E-10
IPR002867
SUPERFAMILY
SSF57850
143 200 58 8.12E-09 –
Pfam
PF01485
145 195 51 1.50E-11
IPR002867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj6g3v1150730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1150730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.