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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1371840 |
| Transcript ID | Lj6g3v1371840.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cadmium/zinc-transporting ATPase 3-like [Glycine max] gi|356532650|ref|XP_003534884.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 87 | 87 | – | – | |
| Gene3D | 3 | 68 | 66 | 2.30E-09 | – | |
| SUPERFAMILY | 3 | 77 | 75 | 1.96E-11 | ||
| ProSiteProfiles | 7 | 73 | 67 | 13.783 | ||
| CDD | 10 | 72 | 63 | 0.00142101 | ||
| PANTHER | 11 | 693 | 683 | 1.60E-236 | – | |
| PANTHER | 11 | 693 | 683 | 1.60E-236 | – | |
| Phobius | 88 | 106 | 19 | – | – | |
| TMHMM | 104 | 126 | 23 | – | – | |
| Phobius | 107 | 111 | 5 | – | – | |
| Phobius | 112 | 130 | 19 | – | – | |
| Phobius | 131 | 306 | 176 | – | – | |
| TIGRFAM | 139 | 690 | 552 | 8.60E-165 | ||
| Gene3D | 139 | 288 | 150 | 4.10E-26 | ||
| SUPERFAMILY | 139 | 193 | 55 | 2.35E-12 | – | |
| TIGRFAM | 139 | 691 | 553 | 9.00E-145 | – | |
| TIGRFAM | 161 | 668 | 508 | 9.10E-77 | ||
| Pfam | 161 | 379 | 219 | 1.70E-51 | ||
| SUPERFAMILY | 201 | 287 | 87 | 6.93E-22 | – | |
| PRINTS | 237 | 251 | 15 | 1.10E-25 | – | |
| SUPERFAMILY | 288 | 382 | 95 | 2.35E-12 | – | |
| TMHMM | 307 | 329 | 23 | – | – | |
| Phobius | 307 | 328 | 22 | – | – | |
| Phobius | 329 | 333 | 5 | – | – | |
| Phobius | 334 | 362 | 29 | – | – | |
| TMHMM | 339 | 361 | 23 | – | – | |
| Phobius | 363 | 643 | 281 | – | – | |
| Gene3D | 378 | 406 | 29 | 1.40E-04 | ||
| Pfam | 384 | 601 | 218 | 1.30E-31 | – | |
| SUPERFAMILY | 386 | 406 | 21 | 2.91E-45 | ||
| PRINTS | 388 | 402 | 15 | 1.10E-25 | – | |
| ProSitePatterns | 390 | 396 | 7 | – | ||
| Gene3D | 407 | 485 | 79 | 7.30E-08 | ||
| SUPERFAMILY | 447 | 688 | 242 | 2.91E-45 | ||
| Gene3D | 508 | 653 | 146 | 7.10E-35 | ||
| PRINTS | 511 | 522 | 12 | 1.10E-25 | – | |
| PRINTS | 533 | 543 | 11 | 1.10E-25 | – | |
| ProSitePatterns | 587 | 609 | 23 | – | – | |
| PRINTS | 587 | 606 | 20 | 1.10E-25 | – | |
| PRINTS | 611 | 623 | 13 | 1.10E-25 | – | |
| TMHMM | 644 | 663 | 20 | – | – | |
| Phobius | 644 | 663 | 20 | – | – | |
| Phobius | 664 | 668 | 5 | – | – | |
| TMHMM | 668 | 690 | 23 | – | – | |
| Phobius | 669 | 691 | 23 | – | – | |
| Phobius | 692 | 868 | 177 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj6g3v1371840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1371840.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.