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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1952800 |
| Transcript ID | Lj6g3v1952800.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max] gi|356546522|ref|XP_003541675.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| Phobius | 1 | 28 | 28 | – | – | |
| Phobius | 14 | 24 | 11 | – | – | |
| Phobius | 25 | 28 | 4 | – | – | |
| Phobius | 29 | 781 | 753 | – | – | |
| PANTHER | 99 | 124 | 26 | 0 | – | |
| PANTHER | 99 | 124 | 26 | 0 | – | |
| PANTHER | 159 | 678 | 520 | 0 | – | |
| PANTHER | 159 | 678 | 520 | 0 | – | |
| ProSiteProfiles | 181 | 215 | 35 | 7.903 | ||
| TIGRFAM | 183 | 216 | 34 | 0.0023 | ||
| Pfam | 203 | 261 | 59 | 7.90E-05 | ||
| ProSiteProfiles | 216 | 250 | 35 | 10.271 | ||
| TIGRFAM | 220 | 251 | 32 | 3.70E-05 | ||
| Gene3D | 222 | 386 | 165 | 7.10E-05 | ||
| ProSiteProfiles | 251 | 285 | 35 | 9.142 | ||
| TIGRFAM | 254 | 287 | 34 | 3.80E-04 | ||
| SUPERFAMILY | 261 | 384 | 124 | 1.33E-05 | ||
| Pfam | 285 | 329 | 45 | 1.20E-13 | ||
| ProSiteProfiles | 286 | 320 | 35 | 13.899 | ||
| TIGRFAM | 288 | 321 | 34 | 3.90E-10 | ||
| ProSiteProfiles | 321 | 351 | 31 | 8.002 | ||
| TIGRFAM | 323 | 357 | 35 | 2.00E-04 | ||
| Pfam | 355 | 383 | 29 | 1.40E-05 | ||
| ProSiteProfiles | 357 | 391 | 35 | 10.413 | ||
| TIGRFAM | 359 | 392 | 34 | 2.30E-04 | ||
| Pfam | 387 | 419 | 33 | 1.00E-05 | ||
| ProSiteProfiles | 392 | 426 | 35 | 11.608 | ||
| TIGRFAM | 396 | 428 | 33 | 2.20E-07 | ||
| Pfam | 426 | 474 | 49 | 8.60E-19 | ||
| Gene3D | 427 | 562 | 136 | 4.90E-09 | ||
| ProSiteProfiles | 427 | 461 | 35 | 14.063 | ||
| TIGRFAM | 429 | 463 | 35 | 8.40E-11 | ||
| SUPERFAMILY | 436 | 528 | 93 | 9.94E-07 | – | |
| ProSiteProfiles | 462 | 496 | 35 | 9.197 | ||
| TIGRFAM | 464 | 497 | 34 | 8.70E-04 | ||
| SUPERFAMILY | 486 | 538 | 53 | 1.33E-05 | ||
| Pfam | 496 | 533 | 38 | 1.80E-07 | ||
| ProSiteProfiles | 497 | 531 | 35 | 12.803 | ||
| TIGRFAM | 499 | 532 | 34 | 3.40E-08 | ||
| ProSiteProfiles | 532 | 566 | 35 | 8.232 | ||
| TIGRFAM | 537 | 567 | 31 | 8.30E-04 | ||
| Pfam | 562 | 594 | 33 | 2.40E-09 | ||
| ProSiteProfiles | 567 | 601 | 35 | 10.49 | ||
| TIGRFAM | 571 | 602 | 32 | 3.10E-06 | ||
| SUPERFAMILY | 582 | 699 | 118 | 1.33E-05 | ||
| Gene3D | 600 | 698 | 99 | 4.90E-09 | ||
| Pfam | 601 | 650 | 50 | 9.30E-13 | ||
| ProSiteProfiles | 602 | 636 | 35 | 12.781 | ||
| TIGRFAM | 604 | 637 | 34 | 6.10E-07 | ||
| ProSiteProfiles | 637 | 667 | 31 | 10.084 | ||
| TIGRFAM | 639 | 667 | 29 | 4.50E-07 | ||
| ProSiteProfiles | 670 | 704 | 35 | 7.048 | ||
| Pfam | 673 | 696 | 24 | 0.14 | ||
| ProSiteProfiles | 705 | 739 | 35 | 7.98 | ||
| ProSiteProfiles | 740 | 774 | 35 | 5.196 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1952800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1952800.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.