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Lj6g3v2274460.1

Overview

Field Value
Gene ID Lj6g3v2274460
Transcript ID Lj6g3v2274460.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable importin subunit beta-4-like [Glycine max] gi|356558485|ref|XP_003547537.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10527:SF6
3 1039 1037 0 –
SUPERFAMILY
SSF48371
3 597 595 3.57E-128
IPR016024
Gene3D
G3DSA:1.25.10.10
3 599 597 3.80E-132
IPR011989
PANTHER
PTHR10527
3 1039 1037 0 –
Pfam
PF03810
23 87 65 1.50E-14
IPR001494
ProSiteProfiles
PS50166
23 89 67 13.512
IPR001494
SMART
SM00913
23 89 67 2.60E-08
IPR001494
Pfam
PF02985
162 190 29 0.001
IPR000357
Pfam
PF12717
360 493 134 4.30E-06
IPR032682
ProSiteProfiles
PS50077
379 417 39 9.084
IPR021133
ProSiteProfiles
PS50077
420 455 36 10.096
IPR021133
SUPERFAMILY
SSF48371
645 773 129 3.57E-128
IPR016024
Gene3D
G3DSA:1.25.10.10
645 1044 400 3.70E-45
IPR011989
SUPERFAMILY
SSF48371
645 1025 381 8.23E-46
IPR016024

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0008536
Molecular function Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj6g3v2274460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2274460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.