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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0016700 |
| Transcript ID | LotjaGi1g1v0016700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2122723..2126951) extracted from Lotus japonicus Gifu genome v1.2.
GACACTTTGGAGGGAAAGAAGAAGATGAAGTTGGAATCACAATCACAATCACAGAGCAATGCTCTTCTCACCAAAATCAA AGGTTCTTCACTTCACACGAAAAAACCATTCACTTTCCCACCAATTCAACTCATTGATTCATCGCGTGTTTAGATTTTCG TCAAATTCAACTCTACAAATTCACATTTCTTCATTTTCGTGTTCAAGATCTATGAAATCACGTTTTCTACAAATCAATGT CGATTTTGCGTTTGCAGAATTCACTCGAGCTTTGCTCTTGGACCTCACCAGTGGACGCTCACCGCTCATTCTCATCGATC GATTCAGAAACCACTGCACCAATCTCAGCTCCAACAACTGGTTCGGTGTTCCTTTCTAATCTCAACCATTTTTGTTTTCT CTCAGATTCCAACGTTTTTTGTTTAACTGGTTCGCGAATTGCAGTTTCTGCAGCTCCGGTTTGCCTTGCGGAAAGGAAGC TCTCACGCTTTGCAAGGAAAGCCATGTTCACAGAATAGGTCACATTCTACTCTACCTTCGATTTTTCAATTTTTCATGAT TTTCAATTTCATTGTTTATTATTGAATTATTTGTGCTCAAAATTTGTTGATTATGAGTTTTTTTGTATTGGGTATGTCTC AGATGTTATGTTGAGGGTGTTGTTGATTGTTCAGAAGCTTTTGCAAGAGAACAAGCACACTTCCAAGAGGGACATTTATT ACATGCATCCATCTGTGTTTTTGGGTGAGTCTTTTAGGATTTGGGTAATTGTCATTTGGTTTAAGAATAAGATTAATAAT AGGCTTAATTGCACATTTGGTTTTTGCTAATTTGGTAGTTGAGGGACGATTTTCACAGGAAGGGCAAAGTTGGGGGACCA AATGTGCAATTAATCCTTAATAATTGCCTTTCAGTTTCTTTCTGCTCATATGTTTTTTAGTTTTTGTTTTATGGTTCCAG CTATTGTGAAAACTTGAATTTTTTAAGAGTTCTAGAACAGCCTTGACTAGAATTGTCAACATTGTTTCTCTACTGCTGTG AGGTTGAAGCCAAGTTGTATGGTCTTATTAGGTTCCCTTTTGAGTTATACAATGATCTTCGCGTATAAAAAGCTTTGGAT ATCTTATGGAAAGAGTTTGCAAAGTTATACTATGATTCTTAATTATACACAACTTGCCACAATCTTGTACACATGATTGT TTAAAAGTCAATGCCATGACTGCTATATTGCTGATTCTTAAAAGGTTTTCTTTCTATGTTTATAGCTTTAACTACTGCTG CATGACACAATTATTTCTTTTTCATGTGATCTATTCCTTTTCACAATGCAGATCAGTCAGTTGTGGACCGCTCAATAAAT GATATATGTGTCCTTATGCAGTGCAGTCGCCATGACCTTAATGTGGTAGAATTTTTTGCACTTTTTTTTTTAGTTTGGGT CTCTTAACTTGGTGTATTTTGGTGAATAAAACTTCATATAAATTTTCTGATACTCTTCTCTTGCAGCTTATTCATTTGAA ATAGAAAGCAACTCATGCTTCATGTTTGAGAGGCTTATGTTTTTTTCCTTTCATTTTTCTTGTTTGCAGGTACCTGCTGG GAAAGGGTACAAGATGAGATCACACACTCGATCTTGGGAATTTCACTTTTCTGTCATTCCCTTTATATGAACAATGATAA TCGTTTATTTCACGTCTGATACTATTTTATGAGTGCATGACTTTTTGTATAAAACAAAACAAAATCTCACCCCTGGTGCA TCTGAAAGTTGATATGAACTTCAAGGGATACTTATTATAATAATTGCTATTTTTGAGTTTTGAGATCTATTGTCGTCATT GGTTTGACAAATTCCATTGCTATCATAATTGATGACAGTGAGAAAATATGGTTTCTATTATGATTCTTCCTAGTTTATAC TCAGAACATTAATAAGCCAGGCATATATGGCATTCGTCCATCTAATTTCTTCTCTCTTGCTATGTCAGAAATTGTTAATG ACTTTTCTCAAAGCTGATACTTTTTGCCTTCTGCTCAGTTTCTTCATATTCTAGTACCATGTCTAAATGTGTTCAACTGG TAAGACTTATGCATCAAATTTATTCCTGCTATAGGATAGTCATGGGCTGGATAAGATTCTTTGAAGGAAAAAGGATATAT GACTGCATCAGTTCTCCCAACACTGTAAGAACTAGGAACTAATTTTACTGCATTAATTTTCACCATATAATTTACATATA ACCATATAGCTTTCCTGCAGGCCCACCCTATCCCTGTTCATGTTGAAGAAGTTCAAGGTATCCTACTTTCTGGGTGAATA TACTTAAAGTGTTTAGCTTCCTTCTTCTAAGTTCTGATCGTATTTTCTTCTTCGTAGTAAAATAAAAAGTGATCAGATAT GAGGAAAACATTTCTTAACTGCAGTGTATAGATATCGTTAGTGTTGCTCATTACATATTAGTTGTCGAGAAAGAATCAGG TAAGCAAATGCTTCTGTTTTTGAGAAAAGAAGGAGGTGAAAAATAAAGAAGGCTCTTTCCTGACATATTGAAAAGACAGT CTATGTTAAATTTCACTTGCAGTTTTCCAAAGATTAGCAAACGACCAGTTCTGCAATGCAAATCGTTGCATCATCATCAC TGTAAGCCATCACTATCTGCGGCGTTTTAAATGCATTACCATAAGAGCTTCTTTTACAGCAGTTTTTTGGGTTTGAATTC TTTGTACAGGGAAGAGGCTACCCAGATATCCCTACAAGAAGGTGTGAAAAATCTCTCACTTAACTAAAGATATTATGCTA TCAAGCTGCATGTGAGCTTGCCCTTTCATACAGCATTATGAATGTTTGTGTGCGCACATAGTTGCAAATGTTCATGCTTG GTCTGAGTTTGATTTCATTCATTTTGTATCCTAACAGATTTTTGCGGCTTCTGGTTGATAATTTGCACCTCCCCGCATAT TGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACTTACAGATTTGGTTCCATGGTTAGTATTTGTAGAGT TTATCAATTCAGAAATGCTTCAAAACTTGTGTCTTTCAGGGTTCTGAATATGAAATGTGCAGGATTACTGAATGGATTGA ATTTAAATCTGTCTAATGGCTGAGTTACATTTTCATAGCCTGTCTGACTAATCTATTCCCTTCTATTGTTAGCAAATGGC TTATGACACGAAGCATCTTCGTGTCCCAGAGATACACTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATATTTGGTCC CAAAACAGTGCCTTCTTCCTCTGACTGCTGAAGGTAAACTACAGGTATTACTTGTTGTTCTCTCGATTGAATTAGTTTTA TATCTGATCTAATATGTATTGCATCTTCAACATTCGTATAAAGACAAGAGAAAAATTGAAGCCATGCTGCTTAGATGCTA TCTGCAAAGGGAGGTGCCACGATGGAGGTAATATTCATACACATCCTCTGACATTTGTCGTCTTCAACCGGATTAAGATT GTCTGCTGTGTCTTGTATAATTTGTTTATGAAGGTTGGAGTTAAAGCTGATGCTGCAGAAAGGAGTTAAGTTTGAGCTTG AAGCATTATCTGTGCGTACTCTTGCTTTCTTGACAGAGTCTTACATCCCTTCTAAAATTCATGGTAAAGTGAAATTGTAG CATGTTGGATATTGATGCGTTAAGCATTACAAGATCAATTTGGCTTACTACGCTTTTTGGAAGAATTTTTAGTAAAGTGA ATATTTGGACTTAAGAGCTCATCTCAATGATTTGTTGCAGAGTCATAGACCACACAAGGTTGGTTCTCCTAGTGTCTGTT ATGTTCCTTTTGCATTTTAAGTGGTGATGTGTATTGTATATGTTAGAGTCCCACATTGGCTAGAGATGTGGCCAAGCAAT TGCTTATATATGGTTGTGCAAACCTTAACTCTTGAGCTAGTTTTTGGGTTAAGTTAGGCCTCATTCAGTATACTTACTTG TATAATAGGATCTTTGGTTCAACAATCTTAGAGTCATGTATAACCTTGTATTTTTTTTTTTGTCACCAGCCTTGTGTTGT AAGGGGGTTTCTATTATGGATATACCTATAAATTGGGAAGTCCATTTGAGATTTCTCGTTTTTTTTTTTGTTACATACGA GATTTCTCGTTTAAATATTTTTATTTTTGTACACAAGGTTCACATTGAAGTTGCAATTATATTCCATCA
CDS sequence (LotjaGi1g1v0016700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAATGTGTTCAACTGGTAAGACTTATGCATCAAATTTATTCCTGCTATAGGATAGTCATGGGCTGGATAAGATT CTTTGAAGGAAAAAGGATATATGACTGCATCAGTTCTCCCAACACTGCCCACCCTATCCCTGTTCATGTTGAAGAAGTTC AAGTTTTCCAAAGATTAGCAAACGACCAGTTCTGCAATGCAAATCGTTGCATCATCATCACTGGAAGAGGCTACCCAGAT ATCCCTACAAGAAGATTTTTGCGGCTTCTGGTTGATAATTTGCACCTCCCCGCATATTGCTTGGTAGATTGTGATCCCTA TGGCTTTGACATCTTAACCACTTACAGATTTGGTTCCATGCAAATGGCTTATGACACGAAGCATCTTCGTGTCCCAGAGA TACACTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATATTTGGTCCCAAAACAGTGCCTTCTTCCTCTGACTGCTGAA GACAAGAGAAAAATTGAAGCCATGCTGCTTAGATGCTATCTGCAAAGGGAGGTGCCACGATGGAGGTTGGAGTTAAAGCT GATGCTGCAGAAAGGAGTTAAGTTTGAGCTTGAAGCATTATCTGTGCGTACTCTTGCTTTCTTGACAGAGTCTTACATCC CTTCTAAAATTCATGGTAAAGTGAAATTGTAG
Protein sequence (LotjaGi1g1v0016700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKCVQLVRLMHQIYSCYRIVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQVFQRLANDQFCNANRCIIITGRGYPD IPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAE DKRKIEAMLLRCYLQREVPRWRLELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIHGKVKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 220 | 202 | 5.5E-117 | – | |
| PANTHER | 19 | 220 | 202 | 5.5E-117 | ||
| SUPERFAMILY | 20 | 218 | 199 | 5.49E-58 | ||
| Gene3D | 34 | 221 | 188 | 3.8E-64 | – | |
| PRINTS | 47 | 64 | 18 | 1.8E-18 | ||
| CDD | 50 | 201 | 152 | 5.99773E-62 | ||
| PRINTS | 61 | 76 | 16 | 3.2E-9 | ||
| PRINTS | 71 | 92 | 22 | 1.8E-18 | ||
| PRINTS | 103 | 119 | 17 | 1.8E-18 | ||
| PRINTS | 108 | 127 | 20 | 3.2E-9 | ||
| PRINTS | 143 | 167 | 25 | 3.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA catabolic process, endonucleolytic | The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Molecular function | Endodeoxyribonuclease activity, producing 3'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0016700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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