Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0016700 |
Transcript ID | LotjaGi1g1v0016700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2122723..2126951) extracted from Lotus japonicus Gifu genome v1.2.
GACACTTTGGAGGGAAAGAAGAAGATGAAGTTGGAATCACAATCACAATCACAGAGCAATGCTCTTCTCACCAAAATCAA AGGTTCTTCACTTCACACGAAAAAACCATTCACTTTCCCACCAATTCAACTCATTGATTCATCGCGTGTTTAGATTTTCG TCAAATTCAACTCTACAAATTCACATTTCTTCATTTTCGTGTTCAAGATCTATGAAATCACGTTTTCTACAAATCAATGT CGATTTTGCGTTTGCAGAATTCACTCGAGCTTTGCTCTTGGACCTCACCAGTGGACGCTCACCGCTCATTCTCATCGATC GATTCAGAAACCACTGCACCAATCTCAGCTCCAACAACTGGTTCGGTGTTCCTTTCTAATCTCAACCATTTTTGTTTTCT CTCAGATTCCAACGTTTTTTGTTTAACTGGTTCGCGAATTGCAGTTTCTGCAGCTCCGGTTTGCCTTGCGGAAAGGAAGC TCTCACGCTTTGCAAGGAAAGCCATGTTCACAGAATAGGTCACATTCTACTCTACCTTCGATTTTTCAATTTTTCATGAT TTTCAATTTCATTGTTTATTATTGAATTATTTGTGCTCAAAATTTGTTGATTATGAGTTTTTTTGTATTGGGTATGTCTC AGATGTTATGTTGAGGGTGTTGTTGATTGTTCAGAAGCTTTTGCAAGAGAACAAGCACACTTCCAAGAGGGACATTTATT ACATGCATCCATCTGTGTTTTTGGGTGAGTCTTTTAGGATTTGGGTAATTGTCATTTGGTTTAAGAATAAGATTAATAAT AGGCTTAATTGCACATTTGGTTTTTGCTAATTTGGTAGTTGAGGGACGATTTTCACAGGAAGGGCAAAGTTGGGGGACCA AATGTGCAATTAATCCTTAATAATTGCCTTTCAGTTTCTTTCTGCTCATATGTTTTTTAGTTTTTGTTTTATGGTTCCAG CTATTGTGAAAACTTGAATTTTTTAAGAGTTCTAGAACAGCCTTGACTAGAATTGTCAACATTGTTTCTCTACTGCTGTG AGGTTGAAGCCAAGTTGTATGGTCTTATTAGGTTCCCTTTTGAGTTATACAATGATCTTCGCGTATAAAAAGCTTTGGAT ATCTTATGGAAAGAGTTTGCAAAGTTATACTATGATTCTTAATTATACACAACTTGCCACAATCTTGTACACATGATTGT TTAAAAGTCAATGCCATGACTGCTATATTGCTGATTCTTAAAAGGTTTTCTTTCTATGTTTATAGCTTTAACTACTGCTG CATGACACAATTATTTCTTTTTCATGTGATCTATTCCTTTTCACAATGCAGATCAGTCAGTTGTGGACCGCTCAATAAAT GATATATGTGTCCTTATGCAGTGCAGTCGCCATGACCTTAATGTGGTAGAATTTTTTGCACTTTTTTTTTTAGTTTGGGT CTCTTAACTTGGTGTATTTTGGTGAATAAAACTTCATATAAATTTTCTGATACTCTTCTCTTGCAGCTTATTCATTTGAA ATAGAAAGCAACTCATGCTTCATGTTTGAGAGGCTTATGTTTTTTTCCTTTCATTTTTCTTGTTTGCAGGTACCTGCTGG GAAAGGGTACAAGATGAGATCACACACTCGATCTTGGGAATTTCACTTTTCTGTCATTCCCTTTATATGAACAATGATAA TCGTTTATTTCACGTCTGATACTATTTTATGAGTGCATGACTTTTTGTATAAAACAAAACAAAATCTCACCCCTGGTGCA TCTGAAAGTTGATATGAACTTCAAGGGATACTTATTATAATAATTGCTATTTTTGAGTTTTGAGATCTATTGTCGTCATT GGTTTGACAAATTCCATTGCTATCATAATTGATGACAGTGAGAAAATATGGTTTCTATTATGATTCTTCCTAGTTTATAC TCAGAACATTAATAAGCCAGGCATATATGGCATTCGTCCATCTAATTTCTTCTCTCTTGCTATGTCAGAAATTGTTAATG ACTTTTCTCAAAGCTGATACTTTTTGCCTTCTGCTCAGTTTCTTCATATTCTAGTACCATGTCTAAATGTGTTCAACTGG TAAGACTTATGCATCAAATTTATTCCTGCTATAGGATAGTCATGGGCTGGATAAGATTCTTTGAAGGAAAAAGGATATAT GACTGCATCAGTTCTCCCAACACTGTAAGAACTAGGAACTAATTTTACTGCATTAATTTTCACCATATAATTTACATATA ACCATATAGCTTTCCTGCAGGCCCACCCTATCCCTGTTCATGTTGAAGAAGTTCAAGGTATCCTACTTTCTGGGTGAATA TACTTAAAGTGTTTAGCTTCCTTCTTCTAAGTTCTGATCGTATTTTCTTCTTCGTAGTAAAATAAAAAGTGATCAGATAT GAGGAAAACATTTCTTAACTGCAGTGTATAGATATCGTTAGTGTTGCTCATTACATATTAGTTGTCGAGAAAGAATCAGG TAAGCAAATGCTTCTGTTTTTGAGAAAAGAAGGAGGTGAAAAATAAAGAAGGCTCTTTCCTGACATATTGAAAAGACAGT CTATGTTAAATTTCACTTGCAGTTTTCCAAAGATTAGCAAACGACCAGTTCTGCAATGCAAATCGTTGCATCATCATCAC TGTAAGCCATCACTATCTGCGGCGTTTTAAATGCATTACCATAAGAGCTTCTTTTACAGCAGTTTTTTGGGTTTGAATTC TTTGTACAGGGAAGAGGCTACCCAGATATCCCTACAAGAAGGTGTGAAAAATCTCTCACTTAACTAAAGATATTATGCTA TCAAGCTGCATGTGAGCTTGCCCTTTCATACAGCATTATGAATGTTTGTGTGCGCACATAGTTGCAAATGTTCATGCTTG GTCTGAGTTTGATTTCATTCATTTTGTATCCTAACAGATTTTTGCGGCTTCTGGTTGATAATTTGCACCTCCCCGCATAT TGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACTTACAGATTTGGTTCCATGGTTAGTATTTGTAGAGT TTATCAATTCAGAAATGCTTCAAAACTTGTGTCTTTCAGGGTTCTGAATATGAAATGTGCAGGATTACTGAATGGATTGA ATTTAAATCTGTCTAATGGCTGAGTTACATTTTCATAGCCTGTCTGACTAATCTATTCCCTTCTATTGTTAGCAAATGGC TTATGACACGAAGCATCTTCGTGTCCCAGAGATACACTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATATTTGGTCC CAAAACAGTGCCTTCTTCCTCTGACTGCTGAAGGTAAACTACAGGTATTACTTGTTGTTCTCTCGATTGAATTAGTTTTA TATCTGATCTAATATGTATTGCATCTTCAACATTCGTATAAAGACAAGAGAAAAATTGAAGCCATGCTGCTTAGATGCTA TCTGCAAAGGGAGGTGCCACGATGGAGGTAATATTCATACACATCCTCTGACATTTGTCGTCTTCAACCGGATTAAGATT GTCTGCTGTGTCTTGTATAATTTGTTTATGAAGGTTGGAGTTAAAGCTGATGCTGCAGAAAGGAGTTAAGTTTGAGCTTG AAGCATTATCTGTGCGTACTCTTGCTTTCTTGACAGAGTCTTACATCCCTTCTAAAATTCATGGTAAAGTGAAATTGTAG CATGTTGGATATTGATGCGTTAAGCATTACAAGATCAATTTGGCTTACTACGCTTTTTGGAAGAATTTTTAGTAAAGTGA ATATTTGGACTTAAGAGCTCATCTCAATGATTTGTTGCAGAGTCATAGACCACACAAGGTTGGTTCTCCTAGTGTCTGTT ATGTTCCTTTTGCATTTTAAGTGGTGATGTGTATTGTATATGTTAGAGTCCCACATTGGCTAGAGATGTGGCCAAGCAAT TGCTTATATATGGTTGTGCAAACCTTAACTCTTGAGCTAGTTTTTGGGTTAAGTTAGGCCTCATTCAGTATACTTACTTG TATAATAGGATCTTTGGTTCAACAATCTTAGAGTCATGTATAACCTTGTATTTTTTTTTTTGTCACCAGCCTTGTGTTGT AAGGGGGTTTCTATTATGGATATACCTATAAATTGGGAAGTCCATTTGAGATTTCTCGTTTTTTTTTTTGTTACATACGA GATTTCTCGTTTAAATATTTTTATTTTTGTACACAAGGTTCACATTGAAGTTGCAATTATATTCCATCA
CDS sequence (LotjaGi1g1v0016700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAATGTGTTCAACTGGTAAGACTTATGCATCAAATTTATTCCTGCTATAGGATAGTCATGGGCTGGATAAGATT CTTTGAAGGAAAAAGGATATATGACTGCATCAGTTCTCCCAACACTGCCCACCCTATCCCTGTTCATGTTGAAGAAGTTC AAGATATCGTTAGTGTTGCTCATTACATATTAGTTGTCGAGAAAGAATCAGTTTTCCAAAGATTAGCAAACGACCAGTTC TGCAATGCAAATCGTTGCATCATCATCACTGGAAGAGGCTACCCAGATATCCCTACAAGAAGATTTTTGCGGCTTCTGGT TGATAATTTGCACCTCCCCGCATATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACTTACAGATTTG GTTCCATGCAAATGGCTTATGACACGAAGCATCTTCGTGTCCCAGAGATACACTGGCTTGGAGCTTTTCCTTCAGATTCT GAGAGATATTTGGTCCCAAAACAGTGCCTTCTTCCTCTGACTGCTGAAGACAAGAGAAAAATTGAAGCCATGCTGCTTAG ATGCTATCTGCAAAGGGAGGTGCCACGATGGAGGTTGGAGTTAAAGCTGATGCTGCAGAAAGGAGTTAAGTTTGAGCTTG AAGCATTATCTGTGCGTACTCTTGCTTTCTTGACAGAGTCTTACATCCCTTCTAAAATTCATGGTAAAGTGAAATTGTAG
Protein sequence (LotjaGi1g1v0016700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKCVQLVRLMHQIYSCYRIVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVSVAHYILVVEKESVFQRLANDQF CNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIHWLGAFPSDS ERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRLELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIHGKVKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 18 | 238 | 221 | 9.8E-75 | – | |
PANTHER | 19 | 236 | 218 | 1.3E-132 | – | |
PANTHER | 19 | 236 | 218 | 1.3E-132 | ||
SUPERFAMILY | 20 | 234 | 215 | 2.88E-66 | ||
CDD | 61 | 217 | 157 | 2.64465E-68 | ||
PRINTS | 63 | 80 | 18 | 1.5E-23 | ||
PRINTS | 77 | 92 | 16 | 3.7E-9 | ||
PRINTS | 87 | 108 | 22 | 1.5E-23 | ||
PRINTS | 119 | 135 | 17 | 1.5E-23 | ||
PRINTS | 124 | 143 | 20 | 3.7E-9 | ||
PRINTS | 159 | 183 | 25 | 3.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | DNA catabolic process, endonucleolytic | The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
Molecular function | Endodeoxyribonuclease activity, producing 3'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0016700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…