Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0053500 |
Transcript ID | LotjaGi1g1v0053500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING/U-box superfamily protein; TAIR: AT2G40830.1 RING-H2 finger C1A; Swiss-Prot: sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A; TrEMBL-Plants: tr|A0A151QZ96|A0A151QZ96_CAJCA RING finger protein 126 family; Found in the gene: LotjaGi1g1v0053500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7534536..7542737) extracted from Lotus japonicus Gifu genome v1.2.
GACTTTTTTCCTAGGGACAACCCCAGGCCCCAGAACCAGGACAAACACCTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCA GTCTCAGAATCTGAAGCTACTCAGCTCAAAATTTCTTGTTTTTTCCTTTGGTAAGTTCACTCTCATGAATCCTCAACCTC ACAGTCTAATCCTATAGTTTTTGTTTGTTATCAATTTTTCTTTATATATATATATATATATATATATATATTCTTTGCCT TCGATTCTGTGTGATTTTGAGTTTAATCTGGTCCTTTGAGTAAATGGGTATTGATTAATTGATACCCCATTTTAAAAAAT TGGTGCTTTAATTACAAGTGCTGTGTTTTCTTCTTACCATGATTTTGAGTTGGGGTTTGGTTGTGCTTTTTTTTCTCTAC TGTTACTGTTTCTGAGGTTATGGTTACTGATTATGAGTGCTCTTTGCTTCATGCATGGATTTTGATACCCCTTTAGTTAT CTTTGGTAAATTTCTTTCATCTCAGTTGGGAGAATTTTGATTTCATTTGTGATGATGATTATGCTCAGAAATTTCCTCCC TTCTGTAACTGTTGGACCTGATTTCTGGACTGTTCTTTGTTGTGTTGAAGGATGGAATTGTAGCTTTTTGTCTGGTAGAA AATGAAAAAACTCGTTGCAATTGGTTGTGGGGTAATTTTGTTCATGTTCATTAATTTTCAATGGATGATTTATATTTTGT AATGTGCAATTATGGTCAAATTTGTTCTGGTGTTCCAATTCCATGGTTTGATCCTGTTAGAAGTCCCACATTGGCTAGAG ATAAGACCAATCAAGTGTTTATAAAGGTTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCC AATTTCTAATATGGTATCAGAGCCTATCCTAGATCCATTTGTTGTGGAGACCACCCATATTTGGGCCACCCGTTGTTGAT CCCACGTTCCAGTCTGTTCAATCCTGGACGTGAGGGGGTGTGTTAGAAGTCCCACATTGGCTAGAGATAAGGCCAATCAA GTGTTTATAAAGGTTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAAATGAT ATAATTGACTTTATAGTAGCAGCTCCTCTGTTTGTAGTAGACTTCACTTGCCCTTTAGTCGGAAATCATGTAATTGTAAG GATTGTTTTTTATGTGGTTTTGTAAACTGAATACAGCCTTAGTAGAAACCTACTTGATTTATAATCTCCTTTTGTTATAG TTGAAATATTTGGTAATATTATTGATATAAAAAACTGTACAGGGATTCCTCTTCTTATAGAGGGAATTACATAATGTGAT TGATCAAAGTCAAAGAAGGAAATCCTTGACTAAAGAGAGAATTAGGGAGAATGAATGAAAATAAGAAACTACCTAAAATA AACTAAGTACAAACAGGAAACAACATAATTATATACAAACAAAAATATAACTGCTAATTAAGAGCATTAAATGCTCTATT TCACAGTCTGTTGACACTCCCCCTCAAGCTGGCCTAAAGATATCCTCCATAGACAGCTTGCTAGTTATGTTGTCAAAGGA TTTCTTGGGTAATCCTTTGGTTAGGATGTCTGCCGATTGCTCTGCAGTGGGAACATATGTAATACAAATCTGCCCACTTT CTATCTTCTCTCTGATGAAGTGTTTATCAACTTCGACATGCTTGGTCCTATCATGTAGGACCGGGTTGTGTGCAATAGAT ATTGCAGACTTGTTGTCACAATAAAGCTTTATTGGAGGAGAATTGAAAACCTTTAATTCCTGTAGAAGCTTTTCCACCCA TAATGCCTCACAAATTCCATGAGCAACTGCTCTAAATTCAGCTTCTGCACTACTCCTTGCTACAACGGTTTGTTTTTTAC TTCTCCAACTAACCAAGTTTCCTCCAACAAAGGTGCAATAGCCTGATGTTGATCTTCGGTCTGTCACACTCCCTGCCCAG TCTGCATCAGTGTAGGCTTCTACCTGAAGGTGCCCACGGTTTTTATAAAGAAGCCCCTTCCCAGGTGATCCCTTCAAGTA TCTTAAGATTCTAAAAACTGCCTCCAAGTGTTCATGACCTGGTGCATGCATAAACTGGCTTACCATGCTTACAGCAAAGG CAATGTCTGGACGGGTGTGAGATAAGTATATTAGCCTTCCCACTAGTCGCTGATACCTTCCTTTGTCCACCATATTTTCT GTTTCAGCTGGTTGCAGCTTTAAGTTGGGCTCCATGGGTGTTTCTACAGCTTTGCATCCAAGTAATCCTGTTTCTTTTAA AAGATCCAGAATATACTTTCGCTGGTTCATAAAGATACCTTCCTTTGATCTTGCAAACTCAATTCCAAGGAAGTATTTCA ATGGGCCAAGTTCCTTGATTTCAAAAACTTTAGCAAGTTTCTCCCTCAGATTTTTGAGTTCCAAGCTATCATCACCTGTC AGAATAATATCATCAACATATACAATCAAGATAGCAACCTTATTATCTGCTGAATGTTTATAGAACAATGTGTGATCAGC TTGGCTTTGGATATATCCAAGCCCTTTTACCACTGTTCCAAACCTCTCAAACCATGCTCTTGGAGATTGCTTCAGCCCAT ATAATGACTTCTTTAGTCTACACACCTTATTTCTTCCAAGTTCTTCTTCAAATCCGGGGGGAAGACTCATAAACACTTCT TCCTCTAACTCCCCATTCAGGAAAGCATTCTTTACATCCAATTGATGTAAAGGCCAGTTGTAACTTGCAGCAAGGGATAT AAGAATCCGAACAGAGTTAAGTTTAGCAACTGGAGCAAACGTCTCTTGATAGTCTACTCCATAAGTTTGAGTGAACCCTT TTGCCACCAATCTCGCCTTGTACCTCTCTACACTTCCATCGGCCTTGCACTTAATGGTAAATACCCACTTACAACCCACC TGTTTTTTGTCACGTGGCAGGTCTGTTATTTCCCAAGTTTCATTCTTTTTCAGTGCACTCAACTCTTCTAAGACTGCTAA ATTCCAATTGGGATCATCTAGTGCTTCCTCAATGTTTCTAGGCACAAACAGATCTGTTATTTTAGAGGTAAAAGCTTTGT GATTCGGTGAAAGATTTTGGTAGGAAACATATTGGGAAATGGGATGGTTTGTGCTAGATTTTTCTGATTTTTGGGTGCAG GTTCTGGTTCCTTTTCTAATAGCTATGGGTAATTCAATAGTAGAAGTGAAAATGTCAGTGTTACCTCGAATTTCTTGTGG TATTCTTACTTGGCCTTCTTCCGGGATTTCTGGTTGGCTTGGTGCAGAGATGATGGATTGGTCTTTGGTCCTTTTAGGAT ACTTCCGAGTATAAACATGGAACTCCTTTTTTGACTGTGGTATTTCTTTCTCTGTTTGGGCTCCACCTAAGTCTGGCATA AGATTTTCTTTAGAAATTTCAGAACTTGTTTCCACATGTTCTTCCTTGTTGCATTCATCAATAAAATTTGTATTCTCGGT GTCTACAATAGGAATGGGCAGGGGTTCATGCAAAAAATTGTCTTCACTCACATTATTATTCTCCCCCTGAAGGGAATTTT TTTGAAAAAAAGGTTGATGTTCAAGAAAGGTAACATCCATGCTAACACAAAGCTTCTTTGTGATAGGATTAAAGACTCTA TATCCTTTTTGGTTTGGAGAATAACCAACAAAAATGCATTTTTCTGCCCTTGGGTCTAGTTTGGACCGAGATGTGGAAGG TTTATGCATAAAAACTGTACAACCAAACACCTTTAAAGGCATATCAGTATGTAATCGACATGCTGGAAAAATGGTTTTGA AATTTTCCAAAGGTGTGCGATAATTCAACACACGAGTGGGCATTCTATTTATAAGATAGGCTGCTGTTAGGACAGCATCT CCCCACAAATACTTTGGAACATTACTCTCAAACATAATGGCACGAGCTACTTCAAGGAGATGTTTATTTTTTCTTTCAGC GGTGCCATTTTGTTGAGGAGTATTTGGACATGTCGATTGATGCTGAATGCCTTTATTTTTCAGAAACTCATTGAGATTTT GATTGAAGTACTCAGTTCCATTATCACTCCTCAAAATGGAGATCTTTGTATCAAATTGAGTTTCTACCATTTGTGAAAAA CTTTTAAATATATTAGGAACTTCAGATTTTTCATGCATAAGGTAGACCCAACACAACCGGGTGTGATCATCTATGAAGGT TACAAACCACCTTTTTCCAAATTGAGTTGTAATTTTTGAAGGCCCCCAAACATCACTATGGATTAAGTAAAAAGGTCTAG ATGCATGATAAGGTTGAGAATAATAAGGAGCTCTTTGATTTTTTGCAAGAACACAACTTTCACATTCAAGAGAAGAACAA TTAACATTTTTGAATAAATCTGGAAACAAATGCCTAAGATATTGAAAATTCGGGTGCCCTAGTCTGTTATGCCAGAGCAT TATTTGGTCCCTAACAGAGGTGCAACTCATACCACAAAGACCCTGAGCTGCTTTATTTCTGAAAGTATCCTCAAAGTAGT AAAGTCCATCCTTCATCTTAGCACTGCCAATCATCTTCCCCGAAATCCGGTCCTGAAAAACACAATGAGTGTCAAAGAAT GTCACACTGCAATTGGAATCTTTGCAGATTTTGCTAATAGAAAGAAGGTTGCAAGATAGTTTGGGCACATGTAAAACTTT TCCTAAGTCAATGTTATTGGATAAGGTAATCTTCCCCTTCCCTGCAATTGCGGAAAAAGAACCATCTGCAATTCTAATTT TTCCATTTCCAGAACAAGGAGAATAGGTTTTAAATAAAGGAGAAAGGCTAGTCATATGATCTGAAGCACCTGAATCAATG ATCCATGGTGCATGAATATTTGAGGTGCAATTAAGGGAGCTAGGGGTAGAAAAATTACCTGTTTGTGCCACAGAACCACT AGGAGTACCAGATAAAAAATTAGAATTTAACAACCTTATGAGTTCCTCAACTTGTTCCTTTTTCAAGGAAGTCTTTTCTG CCTCATGAGCTGTAGGGAAAGATTTTTGATTTTTAGGACCTGACTTGCCACCCTTTAGATGTGCTGGCCTCCCAATAATT TTCCAGCAACTTTCCCGAGTATGACCGGGTCTGTTGCAGTGATCACACCAGCGGTTTGAGAAGTTCTTCTGGTTAGTAGA AGTCTTAAGGGCAGCAGTTTCTACAGCAAGAGCATTGGTCTCAGAAGGAGGTGCATCCGTTTTGGTCTTTCCCATCATCA CACTTCTGCGAGTTTCCTCTCTTCTAACTTCAGCAAAGACCTCACCCAATGAAGGTAAGGTTGCTCTCCCAATGATTCTG CCACGAACTTCATCTAGCTCTTCATTCAGACCAGCAAGAAACTGAAATATTCTACCTTCTTCCACGGTTTGTCGATGGTG TTTGGCATCCTCTGCAGAGTTCCACTTGTAAGTGTTGAAGAGATCTAGATCCTGCCAAACTCGCTTCAAAGAGTGGAAGT ATTTTGTCACGTTATTACCTCCCTGCCGAATTTCTCTGACTTTCAAGGTGAGTTCATAGATCTGAGATTTGTTCTCAAGA TCTGAATACATTTCCGTGACACTATCCCATAGCTCTTTGGCTGTGGAATAACACATGTAATTGCTGCTAATGTCCTCCTC CATGGAGTTTACCAGCCATGTCATCACCATGGAGTTTTCAGCGTCCCAAACAGCATATTGTGGATCAGCAATATCTGGCA TGGGTTTCTCACCAGTGAGATACCCAAGTTTTCCTCTGCCACGAATATACAACTGGACAGATTGGGACCACCGGAAATAG TTCGACCCATTGAGTCGAAAAGTGGTGATTTGGACAGAATGAGATTCACCGAACAGGACTCGCTGCTCCTGCCTTGGAGG CACAGAATGAGATTCGCCAAACAGGACTCGCTGCTCCTGCCTTGGAGGCTGCGAGACTTTGGGAACCACAATCTCCTCCG TATTCTGATCATCGCTGGCTGAGGAACTGTCAGCCATGGATGCAAATCAGATGCGCAGAGATCTTTGCTCTGATGCCAAG TTGAAATATTTGGTAATATTATTGATATAAAAAACTGTACAGGGATTCCTCTTCTTATAGAGGGAATTACATAATGTGAT TGATCAAAGTCAAAGAAGGAAATCCTTGACTAAAGAGAGAATTAGGGAGAATGAATGAAAATAAGAAACTACCTAAAATA AACTAAGTACAAACAGGAAATAACATAATTATATACAAACAAAAATATAACTGCTAATTAAGAGCATTAAATGCTCTATT TCACAGTCTGTTGACAGTTATTAAAAGTTAGTTTTAGATAGGAATATGCTGCTATCATTTGCCTGCGTCCCAATCTAGCC CTTGATCTTATTTTGGTCCCTTTGTCAGTTTACTCAAAAGCTTGACCTCAATGTGATTTTGTCAGCCTGTGTGCTTCTAA GAATTTCACCCAAAGTCCAAACATGTACTGATGATGAAAAAACATGTTAGAGAAGACCAAGCATATACCAAGTTTAGCTA GAGATAGCCTGTTCCGGTTTCACTCTTACTAAGTTACCTCTGGTTAGTTATTCATATCAGGACTAATCTAGCATAGCTAA ATGGCATATTGAATCTTCAGGGCTTGTTTCATTTATTGATTTCAACTTTATAATTGTTTTTTGATCTATTAAATATTAGT TGTTTTTCTGAATATGTATTACATATTTGACGCAGAGGAAAAGTTGAATTTTGGTGCAGATACTTCTATTTGATTGTTAA AGCGAAAGAATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAGTCAGCCAATTGTGCCTGAAGGGAGGGATGCCAT TTGCCCTTACTGTGATGGGGGGTTTGTACAAGAACTCAATGAGTTGCAAGGAGGTGTTGCACCATCGCAGTCGGGGGAGT TTCATCAAATGCCTGACCTTTTTGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGAGCCGAGATTTGGGCTTATG GATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGGCACCCAAACTTTGATGTTAGAGGGAGGTCTGGTCCTGC TCCTGCTCCTCCTCCTGAACAGAGCTGGGGTGTTTACAGTTCTGGTCCATATCTAATTTTCCATGGTCAAGTTCCTGGAT TTACGTTCTCTAATGGCGGCCCAAGAGGTGCTCCCCGGCGCGCTGAGTTCGGTGACTACTTTATGGGTCCTGGACTGGAA GAACTTATAGAACAACTCACCCTGAATGATCGGCGTGGTCCACCCCCAGCTGCGCGATCTTCAATTGATGCAATGCCTAT TATTAGGATCACACAGGCACATCTTCGCTCTGACTCACACTGTCCAGTTTGTAAGGAAAAATTTGAACTGGGCTCTGAAG CTAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTT TGCCGCGTCGAGCTGCCACCTCAAGGTCATGTTAGCTCTCGTGGTGGCCGAAGTTTGGGAGGAAGGAACGTGAACAGCAG CACTGACGGCAATGATAGCTCCAGGGGCAGGGAGAATAATAACCATCAGAATCAAGGAAGGAGAAATCCGCTATCATTTT TGTGGCCATTCCGTTCTTCTTCGAGTTCTTCAAACAATAATCGTTATGCTGAGACCAGAGGAAGCAGCTCTTCAAACCCT CCTGACCAGAGTAATGGAACAAGTTATGGTGGATGGCCTTTTGATAACTAAAAGCTCCATCTCTTCTGCTCTTTAATAAT GGTTGTGATTTAAAATGAGAAGGAAAGAGTTTCTTAAAATTGTACTGTGAACTTAATCTCATGGAAGGAAGATGGTAGAT AGAAGCTTGTTAAAATCTTTGTACATGGATGCAGCTGTTTGGTTAAGATGAATATCTCTTTGAAACTTTCACTTGTCATT ATACAATTTGATTGTTTCTTGCTGCTTTTGGTTCCCTTAGGGGGATTAGCAGCAAGCACAAAGTGCTAGAATTAGGGGCT CAAGTGTGTTAGATGAAGCTTTTAACCAGTGAAGCCTTCGTTAGATAACAGCCTTATCAGAGTATTTGGTTAATTGTGCC TGATGCGGGTTGCACTTGAAAATGTTGTCAAGCTAATGAATA
CDS sequence (LotjaGi1g1v0053500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAGTCAGCCAATTGTGCCTGAAGGGAGGGATGCCATTTGCCCTTA CTGTGATGGGGGGTTTGTACAAGAACTCAATGAGTTGCAAGGAGGTGTTGCACCATCGCAGTCGGGGGAGTTTCATCAAA TGCCTGACCTTTTTGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGAGCCGAGATTTGGGCTTATGGATGCTGTT GATAATTTCATGAGGCATAGAATGGCTGGAAGGCACCCAAACTTTGATGTTAGAGGGAGGTCTGGTCCTGCTCCTGCTCC TCCTCCTGAACAGAGCTGGGGTGTTTACAGTTCTGGTCCATATCTAATTTTCCATGGTCAAGTTCCTGGATTTACGTTCT CTAATGGCGGCCCAAGAGGTGCTCCCCGGCGCGCTGAGTTCGGTGACTACTTTATGGGTCCTGGACTGGAAGAACTTATA GAACAACTCACCCTGAATGATCGGCGTGGTCCACCCCCAGCTGCGCGATCTTCAATTGATGCAATGCCTATTATTAGGAT CACACAGGCACATCTTCGCTCTGACTCACACTGTCCAGTTTGTAAGGAAAAATTTGAACTGGGCTCTGAAGCTAGAGAGA TGCCATGCAACCATATTTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGCGTC GAGCTGCCACCTCAAGGTCATGTTAGCTCTCGTGGTGGCCGAAGTTTGGGAGGAAGGAACGTGAACAGCAGCACTGACGG CAATGATAGCTCCAGGGGCAGGGAGAATAATAACCATCAGAATCAAGGAAGGAGAAATCCGCTATCATTTTTGTGGCCAT TCCGTTCTTCTTCGAGTTCTTCAAACAATAATCGTTATGCTGAGACCAGAGGAAGCAGCTCTTCAAACCCTCCTGACCAG AGTAATGGAACAAGTTATGGTGGATGGCCTTTTGATAACTAA
Protein sequence (LotjaGi1g1v0053500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSGATHWCYECSQPIVPEGRDAICPYCDGGFVQELNELQGGVAPSQSGEFHQMPDLFDAIHAFMGQRGSEPRFGLMDAV DNFMRHRMAGRHPNFDVRGRSGPAPAPPPEQSWGVYSSGPYLIFHGQVPGFTFSNGGPRGAPRRAEFGDYFMGPGLEELI EQLTLNDRRGPPPAARSSIDAMPIIRITQAHLRSDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRV ELPPQGHVSSRGGRSLGGRNVNSSTDGNDSSRGRENNNHQNQGRRNPLSFLWPFRSSSSSSNNNRYAETRGSSSSNPPDQ SNGTSYGGWPFDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 6 | 36 | 31 | 7.5E-10 | ||
PANTHER | 45 | 304 | 260 | 5.0E-118 | – | |
PANTHER | 45 | 304 | 260 | 5.0E-118 | – | |
Gene3D | 162 | 245 | 84 | 3.4E-20 | ||
SUPERFAMILY | 178 | 245 | 68 | 6.63E-22 | – | |
Pfam | 197 | 239 | 43 | 2.8E-11 | ||
SMART | 198 | 238 | 41 | 1.5E-7 | ||
ProSiteProfiles | 198 | 239 | 42 | 12.253 | ||
CDD | 198 | 239 | 42 | 5.4512E-25 | – | |
MobiDBLite | 246 | 333 | 88 | - | – | |
MobiDBLite | 255 | 333 | 79 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi1g1v0053500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…