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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0065200 |
| Transcript ID | LotjaGi1g1v0065200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|V7B6U2|V7B6U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9011829..9017015) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATATGTAGAAAAATGGAGAAATATAGTATCTGAGTATCTGTTGAATGGTCCTATTATTTCTATGGGTCTATCATTT GTAACACTAATCTTACAATGAGTGAAGCACTTAAGTAGTTTTTATCACTCCTCCCTGATGATGAGAGAGTGAGAAAGCTA AGCTAGGCAACAATACATGGTACACATGAACAGTAGACATGAGCAGTGAGTGGTATAGTGCATAGACCTAGGTATTGAGT TTCCGTAGCATCCATCTTTCCTTGGGAAGGAAAACTCTCAGTTAAGTTGCAGACACACACGTTAACCCTCTCTGTCTCCA CCTGCCATTAATACTCAGCTTCACTGCTTGTGTTGTGTTGTTGATGTTTGAGAGAGAGAGAGAACAAGCCAGCCACTGTT CATGTACACATTTTCAAGGGAGAAAGAGGAGGACACTGCATCTGAAACCTGCTGCATCTGATTCCCACCTTTTTCAGTCT ATAGAGAAGAGACCAACAACCCAAAAATCCCTATTGTTCTGACTGTTTACAATCTCTTTGGAGTTTTCTTCTCACATTTT TTCACCTTCAATTCCGGGAGTGAGTACTCTCTGGAGGACAATTATATCTTATGCAGTCTTCTTTTTCACAAACAGTCACT GAGTGAGATAGGTACTAGCATTTTATTTTATATATTTTATATTTTATAAAGTTTTATTTTTATATAGAAAGAGAGAGAGA GAGTATGTGTGTTTTTCTTGACTTCAGTTTGAAACTATGATAGGGTTTGGAGGTAACAGTTGCAGTGGTGTTTCTTCCTC TATGGACATGATGAACATGGAAACTAATAGGAAGTTCCTTTCTCTGCCTCTGAGCAACAACAGCAACAACAATTCTGGTC CCCAGATGAGAAGGGTACCTGTTGTCATGAGCAATGCTCAAGATCATAACTACAGCAGCCAGCAACAGCAGGACCACAAC ACTAGCAGTAGTGTGAGGGACAAGATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAA GGTGATATAAACTTTTACACATATCAGCTTTCCCTTTCTTCCCAAGAGATGTTGTCCATGTGATCCATGCACTCTTTTAA CATGGAAGCTTAAACACTTACTAAATGATTGGTAGACATTTGCATAGTGCAGTGCAGTGGAGACACCAAACAATCACTCA AGCACGAAAGAAATATAAAAGGGAAATAATAAATGTGATATAAGCTGGATGAGTGTGATAAGAAGAGAGACAAGGAGAAA AATAGAGTATCTGTGTGGTTGTTGGGTGTCTCTGCGCTGTTTGGTTGTCATGTCTGAGTATATACGATGGAAAAACCATG CTTATTTCTCTTTCATTGGTTTTTCCATGGGAATAGAAGCTTTTGAGTTAAGATCCTAGAAATGTGAATTTTTTTATGCT GTATAGATCTTGTTTACTTTCATGTTTTTTTTTTTTTTGCTTGTTTCAATGGTGAGACTTGGGTATTTACAGGTTGGAGC ACCTCCTGAAGTGGTGGCTAGTTTAGAGGAATCATGTGCCAAATGTGAGTCCTTGAATGCATCTGGAAGGACAGGAGGTG GTTCCTTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTCATCAAGTATGAGCATGAGCTC ACAAAACCCTTCAAGGAAGCCATGCTTTTCTTTTCAAGGATTGAGTGTCAGCTCAAAGCTCTAGCAGTTTCAACAGAGTT TGGTGATTATTAATACACTTAAAACATTCATTACTTGTTCCTGAACTTCTCTGACTGTGGAGCAGTCATGGAAGGTTTTC TTGTTTGGGGAAGTGGGTGCGGGTGAGATACCAAGTGTGTCAGTGTGTGTGTGAGAACTTAGTAATTCATTGTGTGACCA ATGGGAGAGAAAAATCAGTAACTACAAACTAGCTGCATGACAGTCATGGATGGTTGTTTTACCACTGTCAAAAGACCTAG AATTTAACCCTTTTGTTGAAATCTTTTGGCTAGAGGCTACCTGCATGTTTAGAAACTCTTACATAATTGAAACTGAAGTC ATAATATATATGTTTGGAAACTCGTTTAAAAATCATGATTAAGCTGAAATCATGGTAGATAGAAACAACTTACCTCGGCT ATTGCTCCACCATGATTTTACATTCTCTGTGGTTTTAAAATGAGTTTCCAAACATGCACTTAATTATTGGACGAAGGTTC TTGATTCTAGAATTGATTTTGAGAAAAGAGAAGTTGATCCAAACACGGTATAAGTGTATGTTTGGAAACTCTTATGAACT AGCTTCTAGTTCTAAAATTGATTTTGAGTAAAGAGAAGGTCATCCAAACATGTTATAAATAAGCAAATGAGATCATGGTC AAGTTTATATATGTCTTTAGACTAGTAGTAGTTCTCCTGTGTCTCAATGTCTTTTATAACCCTTTTGGAAATTAACTGCA AACCTTGAAAGGGTCACTTTGTAGTTACTATTAATAGATCTTTAGTAGATAATGTCCTTCACAAGCTTAATATTGGTATT CAATATTAATTGGTAGAGTACACGACTGAGGGCCCAATTAATATTATAAAAGATGATTGCACATTCATCTCCTGGACAAG TGTGATATATATCTTTGATGATAAAGATGATTTGATTACAGTATATGTTTAGTTATATGAATATCTTCAGAATAAGTTCA GAGCCCACTCAGATGGCCCTTCTTATCTATAAAAGGTGTGATTAGAGTTTAAAGGATATTGATTGAAAAACTTAAACAGT AATTATTTGTAAGATTGTATAATAGATGGGCCCAACGTGTTTGAACTAGGTCAAAAAGTTTGATAATGATATTATAGTGC TTGATGGGAATTCAAGAAAGTGAGATTTTTGCAATATCATTTGAATGATGAAAAGTTTATTCGAGCCTAATGCATCCTAA TTTACTGACCATCAATAATCTAATGGCTTTCCAGATATTTTGAATGGATTCTTATTTTTATTTTCATGTGGCCTTGGTTC TGCTTGCACCATTGTTTCACACATATCCATGTGTTGTCATCACTTGCAAGGCAATAGTCCTTCTTTCTTCTGTACATATA ATTTCTTCACCTTTTTAGGTGCATGGCTCTTTGTCACTGTTTCAAGAACTTGGTAGCAAAAGGAAACTGCTTGTCTTGTT TTCTTTTGTCAATTTTAATTTCCCTGCCAGTTTGTTCCCTCTCAAACCTCTTTTTATAGGTTTTCTACTGGGTGAGGAAG GGGTCACATATTAAGTACATGTATTAGCTAATTCATTTGGTAACTGTATTTTCAAATTAAAAAGTACTTTTGTCATGATA GTTGATGATGATATATGAAATTTTCTACATGGCTAGATACATTTGGTATCAAACCATGTATTTACTCATTTGGTATTTCG GAAAAAAAATTCACCATTGATTCTTTTTATAATTGATTCTGAAGCTAAAATTGGTGCATGTTTGGAAACGGTAACGTCAA AATCATGCTTGACAGAAGTAAAACATGCTTTTGTCTTCAGCATGGTTTTAAAACTAATATGCAAACATGTACTTAATGAG TTTCATGTTGTTCTAGTTACTAGTGATGTGTTAAATGTTAAGTAATCTTGGCTGCATATGTGATATTGTAAATCATGCTA CTTTAGCTTGTGTGCATAAATTACTTTTATTGATAGTTTCATGTTGTTGTGGTGATTTGAAGGTCAAAGTGAATCATCTT CTCAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACACAAGCTGATGATAGGGAACTAAAAGTTCAACTTCTGCGC AAGTATAGCGGTTACCTCGGCAGCCTCAAGAAGGAGTTTCTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTAG GCAGCAGCTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGTAACTAAGTTTTATTACATCCATCATA AATCATATGCATATAATGTATGCTATATTGACAGTGCACACACAATCCAAAGCATAATAACTTCATTAGTTACGCTTTAT AAAACATGTTTGGATCAGATTTTCTTTCATCAATATCAACTTTGAAACCAGAAGCTACTTATTGGAGCTTCAAACCGGAA TTGATTCTTTAATTTACAATAGTGATTGTGAGGCTCCCAACTTTAGAACCAACCAAAAGTTCATATATACCATGTTTCTG CAATTTATCATAGTATATATCTTTGACATGTTATAATGTCCATATTTAATTTGCGGCCAAGACTATGATCGACCATGTTA AAATATGTTCGGTCCACCCATGAGCCATGTTTTTACTACTAACATTCATCACTACATATTATTTCCAAGATGCTCCTTAT ATGCTACAATTAATTTGCACGGAAGTTCTGTCAACTTGTAAACTAGATTTTTCTTAAACCACGGTAGACCAAACATTTTC CAAACTATAGACATTTGAGCATGGTTCTAATTAGAAAATGCATTCACTTATAATTCTATAATTGATGGTATTGTAGAATA ATCCTGGTCATCTGAATAATGGAACTTTAATTTAATTTCATATGTTGGTTTTAGATGCTAATATTTTCTCATGTTAACTT GGGATTGGGGTGAACATGTTTGTAGGAATCTCAAAAGCAAGCACTTGCAGAATCCACTGGATTGGATCTGAAGCAGATAA ACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAAC TACTATATGGAAAATGTTATGTGCAAGCCATTTCCTATGGATGCCATGCCAATGCTTCTTTAATTCCATTTTACATATCC TCTCCCAAGCTAAAATACTCTTATCTGAACCTTGTTTTGTATTATATAGAGCTCTGTCAAAACCCTATCTATTTTCAAGT TGTAGCCTAGCATGCATGGTTATAATGCATGTTTTAGTTTAAGGCAGGGTCAAAATCCATGCTTATCTCTGAACTGCTTC GGAGGAGTGAGTATGAAGCTAAATAGCTAATCATGCTATGTATTATCTACGTACACTTTTTTTGATTATTGCGGATGTTG TGTTATATATTTTTTATAATTTTCATGTATTAAAAAATACCAGGTTTATTTATTGGGTAATGACGAA
CDS sequence (LotjaGi1g1v0065200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATGATGAACATGGAAACTAATAGGAAGTTCCTTTCTCTGCCTCTGAGCAACAACAGCAACAACAATTCTGGTCC CCAGATGAGAAGGGTACCTGTTGTCATGAGCAATGCTCAAGATCATAACTACAGCAGCCAGCAACAGCAGGACCACAACA CTAGCAGTAGTGTGAGGGACAAGATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAG GTTGGAGCACCTCCTGAAGTGGTGGCTAGTTTAGAGGAATCATGTGCCAAATGTGAGTCCTTGAATGCATCTGGAAGGAC AGGAGGTGGTTCCTTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTCATCAAGTATGAGC ATGAGCTCACAAAACCCTTCAAGGAAGCCATGCTTTTCTTTTCAAGGATTGAGTGTCAGCTCAAAGCTCTAGCAGTTTCA ACAGAGTTTGGTCAAAGTGAATCATCTTCTCAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACACAAGCTGATGA TAGGGAACTAAAAGTTCAACTTCTGCGCAAGTATAGCGGTTACCTCGGCAGCCTCAAGAAGGAGTTTCTGAAGAAGAAAA AGAATGGAAAGTTGCCAAAGGAAGCTAGGCAGCAGCTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCG GAATCTCAAAAGCAAGCACTTGCAGAATCCACTGGATTGGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAA ACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAACTACTATATGGAAAATGTTATGTGCA AGCCATTTCCTATGGATGCCATGCCAATGCTTCTTTAA
Protein sequence (LotjaGi1g1v0065200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMMNMETNRKFLSLPLSNNSNNNSGPQMRRVPVVMSNAQDHNYSSQQQQDHNTSSSVRDKIMAHPLFPRLLSSYLNCLK VGAPPEVVASLEESCAKCESLNASGRTGGGSLGEDPALDQFMEAYCEMLIKYEHELTKPFKEAMLFFSRIECQLKALAVS TEFGQSESSSQNEVDVHENNLDTQADDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPS ESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 305 | 287 | 2.1E-150 | – | |
| PANTHER | 19 | 305 | 287 | 2.1E-150 | – | |
| SMART | 56 | 100 | 45 | 8.6E-15 | ||
| Pfam | 58 | 98 | 41 | 4.0E-19 | ||
| SMART | 108 | 159 | 52 | 1.1E-24 | ||
| Pfam | 112 | 157 | 46 | 4.9E-21 | ||
| Pfam | 189 | 210 | 22 | 1.2E-9 | ||
| ProSiteProfiles | 189 | 209 | 21 | 11.139 | ||
| SMART | 189 | 210 | 22 | 7.1E-7 | ||
| Gene3D | 207 | 281 | 75 | 3.8E-23 | – | |
| ProSiteProfiles | 209 | 272 | 64 | 12.228 | ||
| SMART | 211 | 276 | 66 | 2.8E-12 | ||
| SUPERFAMILY | 211 | 283 | 73 | 1.92E-19 | ||
| CDD | 221 | 273 | 53 | 1.26038E-12 | ||
| Pfam | 229 | 268 | 40 | 3.1E-17 | ||
| ProSitePatterns | 247 | 270 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0065200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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